K20133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20133

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20133

Determination of introduced cDNA(s)

  • J033102G02 - Rice Full-length cDNAs - Original: J033102G02

    full reading [+] show sequence

    Nucleotide sequence: J033102G02 - full reading 
    GCCGCCTCGT TCGCTTCTCT CTTCCCCTTC CTTCCATTCC AGCTAGCAAC 
    CGCAAGTCCG CAACGCGAGA AACGCAGGCA GCAAAGCAAG CGAACCCAAA 
    GCTGGCCTCG CACTCACACT GACAGCCTTG CTCTCCTCCT CCCCCTATAT 
    CTCTCCTCCC TCCCTCGCCG CCTCCTCCCC AATCCTCCAA ACCCTAATCC 
    CCCACCTCAC TCTCTCTCGA TCTCGTGCTC TCCTCCTTTC GCGAGCGCGT 
    TCTTTGGAGG GGAGATGGCG GAGGAGCCAC AGCCAGAGGC CGCGCCCGCC 
    GCGGTGGCGG CGACGACCGA GGTGGCGGTG GCGGAGAAGG CGCCCGTGGA 
    GGCGGAGAAG GAGAAGAAGG TGGAGGAGGA GACGCCGGCG GTGGAGGCCG 
    AGGCGAAGGA GGAGAAGAAG GATGAGGCGG CGGCGGCGGC GGCGGCGGGA 
    GGTGATGAGG CCGGGGCGAT AGAGGGGACC GGATCGTTCA AGGAGGAGAG 
    CAACCTGGTG GCGGACTTGC CTGACCCGGA GAAGAAGGCG CTCGATGAGT 
    TCAAGCAGCT GATCGCCGCC GCCCTCGCCG CCTGTGAGTT CAATCTGCCT 
    CCCCCTCCGC CGCCTCCCAA GGCGAAGGTT GAAGCCGCCG TTGAGGAGAC 
    CAAGGCGGAG GAGACCAAGG CCGAGGAGGA ACCCAAGGCT GAGGAGCCGG 
    CCAAGGAGGA GGAGCCCAAG GCCGAGGTGG CGGCGGCGGC GGCGGCGCCG 
    CCGGAGGCAG GAACCGAGGA GCCGAAGGCG GAGGCGTCGT CCGAAGAGGC 
    CAAGACCGAG GAGCCGAAGG CCGAGGCGGC GGCCGACGAG CCGGCCAAGG 
    AGGAGTCCAA AGCTGAGGCG GCGCCGGCTG AGGAAGCCAA GCCGGCCGAG 
    CCGGAGCCGG AGGAGAAGAC CGTCGTGGTC ACCGAGGAAG AGGCGGCCAC 
    CAAGACGGTG GAAGCGATCG AGGAAACCGT CGTGCCCGCT GCTGCTGCGC 
    CTGCTGCCGC CGCCACGGAG GAAGCCGCGG CGCCGGAACC GGAGGTGCAG 
    GCGGCGGCGG CGCCTGAGCC CGTGTTGATC TGGGGCGTGC CCCTGGTAGG 
    CGACGACGAG CGCACCGACA CGGTGCTCCT CAAGTTCCTG CGCGCGCGCG 
    AGTTCAAGGT GAAGGAGGCC ATGGCGATGC TCAGGTCGGC CGTGCTGTGG 
    CGCAAGCGCT TCGGCATCGA GTCCCTCCTC GACGCCGACC TCGCCCTGCC 
    GGAGCTCGAC AGCGTGGTGT TCTACCGCGG CGCCGACCGC GAGGGCCACC 
    CCGTGTGCTA CAACGTCTAC GGCGAATTCC AGGACAAGGA CCTGTACGAG 
    AAGGCATTCG GCGACGAGGA GAAGCGGGAG CGCTTCCTCA AGTGGCGCAT 
    CCAGCTGCTG GAGCGCGGCA TCCTGTCGCA GCTCGACTTC TCGCCCAGTG 
    GCATCTGCTC CATGGTTCAG GTCACAGACC TCAAGAACTC GCCACCTATG 
    CTCGGCAAGC ACCGCGCCGT CACCCGCCAG GCCGTTGCTC TGCTCCAGGA 
    CGACTACCCC GAGTTCATCG CCAAGAAGGT GTTCATCAAT GTGCCATGGT 
    GGTATCTCGC TGCCAACAAA ATGATGAGCC CGTTCCTCAC GCAGCGTACC 
    AAGAGCAAGT TCATTTTTGC CAGCCCAGCC AAATCAGCTG AGACCCTCTT 
    CAGATATATC GCACCAGAGC AAGTCCCTGT CCAATTCGGA GGTCTCTTCA 
    AGGAAGATGA TCCTGAGTTC ACCACCTCAG ACGCCGTTAC CGAGCTCACT 
    ATCAAACCTT CATCGAAAGA AACCGTTGAG ATTCCTGTCA CTGAGAATTC 
    CACGATTGGA TGGGAGCTCC GGGTGCTTGG ATGGGAGGTG AGCTACGGAG 
    CAGAGTTCAC TCCTGATGCC GAGGGTGGAT ACACAGTCAT CGTGCAGAAA 
    ACGAGGAAGG TGCCTGCAAA TGAGGAACCA ATCATGATAG GCAGCTTCAA 
    GGTTGGCGAG CCAGGAAAGA TTGTGCTAAC GATCAACAAC CCTGCATCAA 
    AGAAGAAGAA GCTCCTCTAC AGATCCAAGG TCAAGAGCAC CAGTGAGTCC 
    GTTTGAGGTT GCAGCTGCCT GATCACCAGA TTCACCACAA TGGCAGCTGA 
    ACTCATTCCC TGATGGAAGA GAAACCTTTT GGTTTTGGTT CTTTAATTTA 
    TTGGTTTTGC TGTTTTGGTT CACATTTTGT ATTTGTTTAA TTAAAAACCA 
    AAGTGAGCTT GTTTTTGTGA TAGTTGGAAG GAGAGGGTTG ATATGATATA 
    ATGACATCGT GATGGTTTGT TGAGGGCAGA GGACAAAAAT TGTGGAAGGA 
    CTGAAGAATA TCTGCTGCTT TGTATATCTG TCTGTACATT GCATCTCTGG 
    ATTCTCATGG ACATGTTAAA TTTAGAAGTA CTTGTCATC

    Gene models with high sequence identity

    1. AT4G09160.1 [+] show detail - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
      E-value: 2e-103; Score: 374.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 17.581
    ProfileScan GOLD 9.783
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 5e-35
    FPrintScan PRICHEXTENSN 5e-11
    FPrintScan PRICHEXTENSN 5e-11
    FPrintScan PRICHEXTENSN 5e-11
    FPrintScan PRICHEXTENSN 5e-11
    FPrintScan PRICHEXTENSN 2.1e-09
    FPrintScan PRICHEXTENSN 2.1e-09
    FPrintScan PRICHEXTENSN 2.1e-09
    Coil coiled-coil 0
    HMMPanther SEC14 CYTOSOLIC FACTOR-RELATED 3.2e-111
    HMMPanther SEC14 RELATED PROTEIN 3.2e-111
    Gene3D no description 1.2e-05
    Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 2.4e-34
    HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 1.3e-20
    HMMPfam Cellular retinaldehyde-binding/triple function, N-terminal 1.2e-08
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 7.7e-34
    superfamily Phosphatidylinositol transfer protein-like, N-terminal 3.4e-12
    superfamily Supernatant protein factor (SPF), C-terminal 6.2e-07

    See the detailed result >

    AT4G09160.1

    Model type
    Protein coding
    Short Description
    SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
    Computational Description
    SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G72160.1); Has 12185 Blast hits to 8606 proteins in 820 species: Archae - 53; Bacteria - 1604; Metazoa - 4851; Fungi - 2300; Plants - 1007; Viruses - 130; Other Eukaryotes - 2240 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR