K20143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20143

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20143

Determination of introduced cDNA(s)

  • J023038B22 - Rice Full-length cDNAs - Original: J023038B22

    full reading [+] show sequence

    Nucleotide sequence: J023038B22 - full reading 
    GATTGCCATC TATCACCTCA CCTGAGCTGA AATCAAGAAC TGGATCTAGG 
    AGAAGGTCAT GGTTCCAAGG ATACTCATCG TTCTCCTGGT TGTGCTGCTT 
    GGATTGGCAT TCCAGGCAAT TCTCCGGCCA CCACCTCAAA AATTGTGTGG 
    CTCACCCGGT GGACCTCCTG TGACATCTCC AAGAATCAAG CTCAGAGATG 
    GAAGATATCT TGCTTACAGA GAAGATGGAG TTCAGAAAGA CAAGGCCAAG 
    TTCAAGATCA TCAGTGTCCA TGCGTTTGAT TCCACCAAGG ACTTCCCCTT 
    GCAGGTTTCT AAGGAACTGG TGCATGAACT GGGAATCTAC ATTGTTGGTT 
    TCGACAGAGC AGGGTATGGG GAAAGTGATC CGAATCCTAA GAGGGATGTG 
    AAGAGTGAGG CTTTGGATAT TGAGGAGCTT GCTGACCAGC TCGAGCTTGG 
    ACACAAGTTC TATGTGTTGG GAGTGTCCAT GGGAGGATAC TCAATTTGGG 
    GATGCCTTCA GTACATACCA AACAGGCTTG CAGGAGCTGC CATGGTTGTG 
    CCAATTATCA ACTACTGGTG GCCTTCATTC CCAGCTGAGC TATCCAGGCA 
    AGCCTTCAAG AGGCTCATCG TGCCAGAGCA GAGGACACTC TGGATTGCAC 
    ACAACATGCC ATCTTTGCTC TACCAGTGGA TGACCCAAAA GTGGCTCCCT 
    TCTTCTGCGG CAGCCATGCG CCACCCTGAA ATATTCAGCA AGCATGATTT 
    GGAGGTTCTT CAGAAGATGA TGGCAATGCC TCTCATTGAG AATAAATCTA 
    GGCAGCAAGG CATTTATGAA TCAACACATC GTGATTTGCT TGTTGCTTTT 
    GGAAAGTGGG AGTTTGATCC AATGAATATT ACCAATCCAT TTCCTCAAAA 
    TGAGGGTTCT GTACACATCT GGCAAGGTTA TGAAGACAGG TTGGTGCTGG 
    TTGAGCTGCA ACGGTACATT GCCCAGAGGC TTCCTTGGAT CCAGTATCAT 
    GAATTCCCTG AAGGAGGACA CATGTTCATG CTGGTAGATG GATGGACTGA 
    CAAAATCATC AGAGCGCTCT TGGTTGGAGA ACAGCTCTGA AGTCTCATCA 
    AATCATTCTG TGCTTGTTAG CTTATCATCG ATAGCCAAAA GTTAAAATTT 
    CAAACTTATT AATTCTAGAG TTGATTTTAC ATTTTCT

    Gene models with high sequence identity

    1. AT3G48410.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 3e-103; Score: 372.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.3e-23
    superfamily alpha/beta-Hydrolases 3.3e-34
    HMMPfam Alpha/beta hydrolase fold-1 2.1e-10

    See the detailed result >

    AT3G48410.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G36290.1); Has 1039 Blast hits to 1035 proteins in 267 species: Archae - 10; Bacteria - 561; Metazoa - 10; Fungi - 51; Plants - 319; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR