K20149

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20149

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20149

Determination of introduced cDNA(s)

J013157G23 - Rice Full-length cDNAs - Original: J013157G23

full reading [+] show sequence

ATCGATCGAT CGATGAGCAC TCGCTTTGAT TCGATCAATC GATTGATCGA 
GCTATAGGTA GCCAATTACA AGCTAATTAA AGCAGTAACC GTATTAGATC 
GTCGATGGAG ATGACGATGT CGTCGGCGGC GACGTCGCTG CCGCCGGGGT 
TCCGGTTCCA CCCGACGGAC GAGGAGCTGA TCCTGCACTA CCTCCGCAGC 
CGCGCCACCG CCGGGCAGTG CCCCGTCCCC ATCATCGCCG ACGTCGACAT 
CTACAAGTTC GATCCATGGG ACCTGCCATG TAAGCCTTCT TCCTCGATCA 
TATCGATGGA TCGATTGAGT TGGTCGTTCG GTCAATTGCT ACTGGTTAAT 
TAATTGCAGC GAAGGCGGTG TACGGGGAGA GTGAGTGGTA TTTCTTCAGC 
CCGCGAGACC GCAAGTACCC CAACGGAATC CGGCCGAACC GCGCCGCCGG 
GTCGGGGTAC TGGAAGGCGA CGGGAACCGA CAAGCCCATC CACGACAGCG 
CCACCGGCGA GAGCGTCGGC GTCAAGAAGG CCCTCGTCTT CTACCGCGGC 
CGCCCTCCCA AGGGCACCAA GACCAGCTGG ATCATGCACG AGTACCGCCT 
CGCCGCCGAC CCTCTCGCCG CCGCCGCAAA CACCTACAAG CCCTCCTCCT 
CCTCCCGATT CCGCAACGTC TCCATGAGGC TGGACGACTG GGTGCTCTGC 
CGGATCTACA AGAAGTCCGG CCAGGCGTCG CCGATGATGC CGCCGCTCGC 
CGCCGACTAC GACCACGACG AGCCGTCCGG AGTCCTTGAC GACGCCTACA 
GCTTCTACGC GCCGCCGATG ATCAGCACCA CGCTCATCCC CAAGCTCCCC 
AAGATCCCCT CCATCTCCGA GCTCTTCGAC GAGCACGCGC TCGCCCAGAT 
CTTCGACACC GCCGCCGACC CGCCGGCCGA CCACCATCAG CATGCCCTCG 
CCGTCCACCC CTCCCTGAAC CAGCTCCTCG GCGTCGGCGA CAACTTCCTC 
GCGGAGTGCT ACCCGTCGAC GGCGTCCACG GCCACCGTTG CCGGCGGCAA 
GCGCAAGGCG AGCCCGGCCG GAGACTACGC CGGCGGCGGC CACACGCCGG 
CGAAGAGGCT CAACGGCTCA TGCTTCGACG TGGCGCCGCA GTCCGTGGTG 
GGCGGCTTGC AAGCGACGCC GTCGTCAGTC CTCGCCGGAC TCAACCACCA 
GATGCTTCCT CCTCAGCTAT TCTGAATATA TTCTTAACTA GCTTAATTAA 
TGGCCATGGA AATCGATCAA ACGCAGTCGA TCGAATTTAC GGATGCTACG 
TACTGGCATG AACAATCTTG CCGACGATAT TAAGATCGGA TGGAAGCATG 
GACGACGATG ATGATTGGGG TACGGTATAG AATTATTGTA GTATTGAACA 
ATTAGGCATT TGTATGCGAT TTTTTCTCCT ACGTATTCAT TTCAGGCACA 
GTGCAAAAGC AAGCTGGAGC CTTGATAGTA CTTTACACCG TAGAGAGGGA 
ATGTTGTACA ATTAAAGATT ACTAGATATA CAGAACAATA ATACTTTACT 
GTAGCCAATT GATATACTAC TAGTATACAG GATTGTAGAA GATATCAAAT 
GCAATAGATT CTGGCTCTGA TCTGGGAAAT GGAAATTGCA TGGATGTGTT

Gene models with high sequence identity

AT3G04070.1 [+] show detail - NAC domain containing protein 47
E-value: 2e-60; Score: 85.50

InterPro Scan Digest

Program	Description	E-value
ProfileScan	No apical meristem (NAM) protein	41.472
ProfileScan	No apical meristem (NAM) protein	20.713
superfamily	No apical meristem (NAM) protein	1.9e-39
superfamily	No apical meristem (NAM) protein	3.3e-20
HMMPfam	No apical meristem (NAM) protein	8.3e-30
HMMPfam	No apical meristem (NAM) protein	2.6e-16

See the detailed result >

AT3G04070.1

Model type: Protein coding
Short Description: NAC domain containing protein 47
Computational Description: NAC domain containing protein 47 (NAC047); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC-like, activated by AP3/PI (TAIR:AT1G69490.1); Has 3042 Blast hits to 3035 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3042; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR