K20215

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20215

Determination of introduced cDNA(s)

  • J023033O22 - Rice Full-length cDNAs - Original: J023033O22

    full reading [+] show sequence

    Nucleotide sequence: J023033O22 - full reading 
    GAGCTGCGGC CGCTCACTCC ACCATTCCAC CAACTAGCTA GCTAGCTAGC 
    CACGCCATCC CTTTCTCCTC CTCCTTCTTC TTCTTCTTCT TCTTCTTCTT 
    GGTCCGGAGA GAGTAGAGAG GAGGGCGCGC AGCGAGATGG CTTGCCCGGC 
    GCAGTCGATG CTGTCGGCGA GCACCACCAG CTGCTGCGCG TTCCTGAGGA 
    GCAGCGCCGC CGCCAAGCCA CAGGCCGCGG CGTCGGCGGC GGCGAGCCTC 
    GCGCGAGGGG GGAGGCTGTT CCTGCTGTCC TGCAACGCCT CGTCGTCGTC 
    GTCGTCGCCG TCGCCTTCTT CACCTCCGCC GCCGGCGCCG GCGGCGGAGG 
    ACTGCAACGA GGAGGAGTGC GCGCCGGAGA AGGAGGTGGG GAGCCTGAGC 
    GCGGAGTGGC TGGCGGAGGA GCGGACCAAG GTGGTCGGCA CCTTCCCTCC 
    CAAGAAGAAG GGATGGACCG GCTACGTCGA GAAGGACACC GCCGGCCAAA 
    CCAACATCTA CTCCGTCGAG CCGACGGTGT ACGTGGCGGA GAGCGCCATC 
    AGCTCGGGGG CGGCGGGCGC GGCGGCGGAC GGGTCGGAGA ACACGGCGGC 
    GATCGCCGGC GGCCTCGCCC TCGTCTTCGT CGCCGGCGTG TCGTCCATCC 
    TCATCCAGGT CGGCAAGAAC CAGCCGCCGC CGCAGGCCAC CGTCTACTCC 
    GGCCCGCCGC TCAGCTACTA CGTCGCCAAG TTCCAGCCGT CCCTCGCCGC 
    GGTCGCGCTC CAGCAGCAGC CCGCCGTCGA CGCGCCCGCC ACAGAGGACG 
    CCTCGTCGCC GGCGCCGGCG TCCCCCGCCG CCGCCGCCGC AGAGGACCAG 
    CTCTCCTCCT GAACTGCTGC TGCTGCAGAT AGAGAAGAAG AAGAGAAGAT 
    CAGAAATGTC TGTGACTTCA GACATGATGC TTGTATACGT ATCATCACAG 
    TTCACAAAGA TTCAAATGTA CTGATGAAGG ATATGCACGT ATACACTACA 
    TGGTAGATTG ATGAAACCAT TTTTAAGTTT CGTATATATA CAAGCATAGA 
    TTTGATCACG

    Gene models with high sequence identity

    1. AT5G07020.1 [+] show detail - proline-rich family protein
      E-value: 3e-39; Score: 159.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G07020.1

    Model type
    Protein coding
    Short Description
    proline-rich family protein
    Computational Description
    proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR