K20231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20231

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20231

Determination of introduced cDNA(s)

  • J033091C10 - Rice Full-length cDNAs - Original: J033091C10

    full reading [+] show sequence

    Nucleotide sequence: J033091C10 - full reading 
    GATGCGTAGT ACCCCCCGAA TATTCGGACG AGATGATCAC ATCATCACGC 
    GTCCCCTAGA AAAACCCACT CCGCCGCCGC CGTCGTCGCG TCGCACGCGG 
    CGCCCTAAAA CAGCAGCCGC CGCGCCGGCC GCTCGCCACA TTCACACGAG 
    CGGGGCCGGC CTCTCTCACG AGAGCAAACC AACAAACTAG TTCGGCGAGC 
    GAGCTCGGTC AATCGGGATA CCGCCAAAGA GTGCGTGCGA GTGGCAATGG 
    CGATGCCGCT GGGTGGGATT CTCCTCCTCT TCCTCGTGCT CCTCGCCGCC 
    GCCGCGGCGG GCGGCGGCGG CGGCGTGTGG GCGTTCTCCT CGTCGTCGTC 
    GTCGTCGTCG TATTCCAGGA TCGGCGAGCA GCCGCTGTCG CTGATCGGCA 
    TCCACCGCGC GACGGTCGGC ATCGACGCCG CGGCTTCCGT GCAAGCGTCG 
    CCTCGGCTTC TCGGTGTCAA GGGGGAAGAT ACTGCCTGGG TAACTGTTGA 
    TTTCGCAGCT CCGCATGCGA GTGACGGCGA TTGGATCGGA GTATTCTCTC 
    CTTCAAATTT CAACGCGTCC ACATGCCCCG GTCCTTCTGG ATCAGACTCA 
    GGACCTGTTA TATGCTCTGC ACCAATAAAG TATCAGCTTG CAAATTATTC 
    TTCAGATTAT GGCAAGACAG GAAAAGGCAC TCTCAAGTTT CAGTTGATCA 
    ATCAGAGGCA GGACTTCTCC TTTGCACTGT TCACTGGTGG TCTCTCAAAT 
    CCAAAGCTTA TCGCAGTATC AAATAAGATC GCCTTCGCAA ACCCGAAAGC 
    TCCGGTTTAC CCTCGTCTAG CTCAAGGCAA ATCCTGGAAT GAGATGACTG 
    TCACATGGAC TAGTGGTTAT GACATCAAAG AGGCATATCC CTTTGTTGAA 
    TGGGGCATGA AATGGAGCCC TCCTACGCGC ACAGCAGCTG GCACCGTCAC 
    TTTTGATCGC GAAAGCTTAT GCGGAGAACC TGCCCGTACT GTTGGTTGGA 
    GAGATCCAGG TTTCATACAC ACAGCATTCC TGACTGATTT ATGGCCAAAT 
    AAAGAATACT ATTACAAGAT TGGACATATG CTACCTGATG GAAAAATTGT 
    ATGGGGCAAA TTTTACTCCT TCAAAGCACC TCCTTTTCCT GGGCAAAAGT 
    CACTGCAGAG GGTTGTCATT TTTGGTGATA TGGGAAAGGC CGAGAGGGAT 
    GGAAGCAACG AGTACAGCAA CTACCAGCCT GGATCACTGA ACACAACTGA 
    CACACTGATC AAGGACCTTG ACAACATCGA CATTGTATTT CACATCGGTG 
    ACATTACCTA TGCCAACGGG TACATTTCCC AGTGGGATCA GTTCACTCAG 
    CAAGTCGAGC CGATCACTGC TCGAGTCCCC TACATGATTG CAAGTGGAAA 
    CCATGAACGG GATTGGCCAA ACAGTGGATC TTTCTTCAAT GGGACAGATT 
    CTGGAGGGGA GTGTGGGGTG CTTGCTGAGA CCATGTACTA CACACCCACA 
    GAGAACAGGG CAAACTACTG GTACAAGACG GACTACGGGA TGTTCAGATT 
    CTGCGTGGCG GACAGCGAGC ACGACTGGCG GGAAGGCACG GAGCAGTACG 
    CGTTCATCGA GAGCTGCCTC GCCACGGTGG ACCGGAAGAA GCAGCCATGG 
    CTGGTGTTCA TCGCGCACCG CGTCCTCGGC TACTCCTCGG GCTTCTTCTA 
    CGGCGCCGGC GGCGCCTTCG CGGAGCCGAC GGCAAGGCAG AGCCTCCAGA 
    GGCTATGGCA GCGGCACCGC GTCGACCTCG CCTTCTACGG CCACGTCCAC 
    AACTACGAGC GGACGTGCCC GGTCTACGAC GGGCGGTGCG CGTCGCCGGA 
    GAGGTCGCGC TACTCCGGCG CGGTGGGCGG CACCATCCAC GCGGTGGTCG 
    GCGGCGGCGG CAGCCACCTG AGCAACTTCA CCGCCGAGGC GCCGCCGTGG 
    AGCGTGTACA GGGAGATGGA CTACGGCTTC GTCAAGCTCA CGGCGTTCAA 
    CTACACGTCG CTGCTCTACG AGTACAGGCG GTCCAGCGAC GGCGAGGTGC 
    ACGACAGCTT CACCGTCCAC CGGGAGTACC GCGACGTGCT CGCCTGCGTC 
    GCCGACAGCT GCCCGCCGAC CATCCCGCCG GCGACGTGAT CCAGCTCCGG 
    TGATTCCGCC GGCGAGTCTG CCGGCGACGT GTGCACTATT GCTGCTTGGT 
    GGTGCTTGCG GGCCTCGTCT GTAATCTTGA CTTGTCAATC GTGTGTAAAT 
    TGAATTGCGA AATATTTCGA AATTAAGTCA AATAAAGAAA TGTT

    Gene models with high sequence identity

    1. AT5G50400.1 [+] show detail - purple acid phosphatase 27
      E-value: 0; Score: 800.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ACID PHOSPHATASE RELATED 3.9e-105
    HMMPfam Metallophosphoesterase 2.7e-16
    superfamily Metallo-dependent phosphatases 1.2e-65
    superfamily Purple acid phosphatase-like, N-terminal 2.7e-25
    Gene3D Purple acid phosphatase, N-terminal 0.000031
    Gene3D no description 1e-81

    See the detailed result >

    AT5G50400.1

    Model type
    Protein coding
    Short Description
    purple acid phosphatase 27
    Computational Description
    purple acid phosphatase 27 (PAP27); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 24 (TAIR:AT4G24890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR