K20248

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20248

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20248

Determination of introduced cDNA(s)

J023112N11 - Rice Full-length cDNAs - Original: J023112N11

full reading [+] show sequence

TATCTCGGGA TCTCGCCCAC CCACCACTCC ACCCCCTCTC CTCTCCGTGC 
GCCGCCGCAG AATTCCTCGC CGCCGCCGCC GCCGCCGCCG CCGTGAGGTC 
CATCGAGATC GCGACCGGAG CAGGTTGCGA TGGCCCGCGT GTACGTCGGA 
AACCTGGATC CCCGCGTGAC GGCGCGGGAG CTCGAGGACG AGTTCCGCGT 
CTTTGGAGTT CTTCGGAGTG TATGGGTCGC AAGAAAGCCA CCAGGTTTTG 
CATTCATTGA TTTTGATGAC AGGAGGGATG CTCAGGATGC AATTCGTGAT 
ATAGATGGCA AGAATGGATG GAGAGTTGAG CTGTCTCGTA ATGCAAGCAG 
TGGTCGTGGT GGCCGTGATC GATATGGTAG CTCTGAGAGC AAGTGTTATG 
AATGTGGTGA GACTGGGCAC TTTGCTCGTG AATGCCGTTT GAGGATTGGT 
TCCGGGGGTC TAGGCAGTGG AAGGCGTCGT AGCAGGAGCC GCAGCCGCAG 
CCGAAGTCCC AGGTACCGCA GGAGTCCAAG CTATGGCAGA AGAAGTTACA 
GCCCTGCAGG GCGCTCTCCA AGGCGTCGTA GTGTGTCACC GGCTCGTGCA 
CGCAGCTATA GCAGGTCACC ACAATACAAC CGTGGCCGTG ATGAATCTCC 
TGCCTATGAT AACGGATATC GCCGCAGCAG AAGTTAGAGC TGAACCTGAT 
GTCTAAAGAC TGCTGTTACA AATGTTACTT TGTGGGTTGT CAGCTATGAA 
CAATGCCCTA CTCCAAATAT CATCATCAAC TCTGGACTTT GATTAAGGCA 
TCGGCCTGCA CTGCTTAAAC GACTCGGCCG ACTACGGCTA CCAGTTATAT 
CTTCGTGGTT GTGTTCTTCG CTCTTCATTC TACGCGCGCC CTCGCCTGCT 
TCATGCAAAC GTCATACAGC CCCATTAGTT GCTGCCTACA ACACCTCTTC 
GTGATCCATA TACTTCGTTG GAGATGCTGC TCATCAGAAA ACAGTAATCG 
CCTTCTTTTA TCGTAATAAA AATTTGGTCA TATTGTCTTC GGAACAACAG 
TAAGTGCAGC ATCTGGAAGT ATTGGTGAAA CAAAGTTCTT CGTAGGCATA 
GACTCCAGAA AATGAATCTG CAATCCGAGG AGCTGCAGTA TTCAGTTGGA 
TGATTTACAC CCCTGCCCAG TCCGTCACGC CTTGTGGCAG CCAGAGGTTT 
TGCTCTCCAT GATCTTCCTT CTGCACTCGC TCAGCCTGCC TCAGCCTACC 
CTGCGTGCTG CCGTCTAGCC AAGAGCCTTC GCCACCACTG CTTCCCCGAC 
GTCGCCTTCG TTTCCATTGC TTCCCCGACG TTTGATTTCA TTTGCTTAGC 
ATTTGTTCGT CAAATTAATG TGGTGAATGG TTATTTCTTA GGGATCTACG 
GGTGAAAAAT GCCAGATGTT ATTCT

Gene models with high sequence identity

AT4G31580.2 [+] show detail - serine/arginine-rich 22
E-value: 1e-24; Score: 111.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	RNA recognition motif, RNP-1	5.1e-16
HMMSmart	Zinc finger, CCHC-type	0.00011
ProfileScan	RNA recognition motif, RNP-1	15.34
ProfileScan	Zinc finger, CCHC-type	10.823
HMMPanther	ARGININE/SERINE-RICH SPLICING FACTOR	1e-32
superfamily	RNA-binding domain, RBD	2.1e-15
Gene3D	Nucleotide-binding, alpha-beta plait	2.5e-12
HMMPfam	RNA recognition motif, RNP-1	3.2e-14
HMMPfam	Zinc finger, CCHC-type	2.3e-07

See the detailed result >

AT4G31580.2

Model type: Protein coding
Short Description: serine/arginine-rich 22
Curator Summary: Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.
Computational Description: serine/arginine-rich 22 (SRZ-22); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1); Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4; Bacteria - 845; Metazoa - 6508; Fungi - 1364; Plants - 2624; Viruses - 137; Other Eukaryotes - 1115 (source: NCBI BLink).
Link: InterPro Scan - TAIR