K20302

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20302

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20302

Determination of introduced cDNA(s)

  • J013070C18 - Rice Full-length cDNAs - Original: J013070C18

    full reading [+] show sequence

    Nucleotide sequence: J013070C18 - full reading 
    GGGCGTAATA GAAAGAGAGA TCTCCCGTCT CGTCCGTCGT CTCCTCCGCT 
    CCTTGCGCCA AGACGAGTCG CGGCTCAACA GAGGAGGGGC GCCGATCTCC 
    ATCTGGCGAG CAGAGCAGGG GAGGGGAAGG GAAGGTATCC TGAAAGATGC 
    TTAATCTTAT CAAAATAAAG GATAAAAAGA AAGAGCAGGC AGCAAGTGCT 
    GCTGGAAAGG CTCCTGTGAA GAAGCAATCT GCTGGAGAGC TCCGTCTTCA 
    CAAAGATATT AGTGAGCTAA ACCTACCCAA GAGCACATCA ATTTCTTTTC 
    CCAATGGCAA GGATGATCTG ATGAATTTTG AGATCATCGT CCGACCTGAT 
    GAAGGATATT ACCTAGGTGG CACTTTCGTC TTTACTTTTC AAGTCTCTCC 
    CTCTTATCCT CATGAACCTC CAAAGGTGAA GTGCAAGACC AAGGTATACC 
    ATCCAAATAT TGATTTGGAA GGAAATGTAT GCCTGAACAT TTTGCGTGAA 
    GATTGGAAGC CTGTTCTCAA CATCAACACT GTTATTTATG GCCTTAACCT 
    TCTTTTTACG CAACCAAACG ATGAGGATCC GTTGAACCAT GAAGCAGCAG 
    CTGTCCTCCG TGACAACCCA AAGCTGTTTG AAGCTAATGT TAAAAGGGCA 
    ATGGCCGGAG GCTATGTGGG TCAACACTAT TTCCCAAGAT GTGCATGATA 
    TGGTGCTGGG TGCCACAAAC ATTAGTAAGT TAAGCCACCT GGGCCTCTTC 
    CCGACATTCT GGATTGTATG GTTTCGGTGC GTTAAAGTGC TGTCGGATGG 
    ATGTGATATG TTGACTGTAT GACGGCGATG CTGCCATCTG TGTGATATTT 
    GTTTAAAGTC AGTAAATTGG TAATCTGGTG GTGGTACAGA TAAAATTTGA 
    GTTGCAGTTC AAGCTGGATT TATACATCAT TTTCTTTTGT GC

    Gene models with high sequence identity

    1. AT4G36800.2 [+] show detail - RUB1 conjugating enzyme 1
      E-value: 2e-85; Score: 312.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    HMMSmart Ubiquitin-conjugating enzyme, E2 1e-35
    superfamily Ubiquitin-conjugating enzyme/RWD-like 6.9e-45
    HMMPfam Ubiquitin-conjugating enzyme, E2 2.5e-37
    HMMPanther RUB1 conjugating enzyme Ubc12 3.8e-108
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 3.8e-108
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 7.1e-40
    ProfileScan Ubiquitin-conjugating enzyme, E2 29.142

    See the detailed result >

    AT4G36800.2

    Model type
    Protein coding
    Short Description
    RUB1 conjugating enzyme 1
    Curator Summary
    RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
    Computational Description
    RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR