K20307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20307

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20307

Determination of introduced cDNA(s)

  • J013140D13 - Rice Full-length cDNAs - Original: J013140D13

    full reading [+] show sequence

    Nucleotide sequence: J013140D13 - full reading 
    AAGGGTGCGA CGGCCGACGG GGGAGGAAGA AGCAGCAGCT CCATGCACCG 
    GCTTCCTCTG GCCTCACGGC CACCGGGTCC GCATCGCGCG GCGGCCGCCG 
    CTCATCGCGC TCCCCAGAGG ACGACGACGG CGTGCTGCGG CCGCCTGAAG 
    CAGGAGGCGA CGCCGTCATT TGCCTCTCTC GCCGTCGCTG CGTCTGCGGC 
    AGCAGAGCGC GCGGCCACGC CGCTGTTGGC CGCGGCGGCG CTCCTCCTTT 
    CTGCCGCATC TCCTGGCTTC CTAGCTTCCA CACCATCAGC TTTTGCTCAA 
    TCCGAAGGCG CAGCGCTGTT CCGGAAGGCG TGCATCGGCT GCCATGATAT 
    GGGAGGAAAT ATCCTACAGC CGGTAAGCTT CTGAAACCAT TACTCGATGG 
    CCGGACACAA ATTTTCAACC TTTTTATTAG CTTGCTGATT TGTCACGTAC 
    AGGGCGCCAC TCTGTACATG AAGGATCTTG AGAGAAATGG AGTTGCCACG 
    GAGGACGAGC TATACAATAT AACGTACTAC GGGAAGGGAA GAATGCCGGG 
    CTTCGGAGAA AAATGCACCC CGAGAGGGCA GTGCACTTTC GGACCTCGGC 
    TGGTCGAAGA TGATATCAAG CTACTGGCCG CGTTTGTCAA GTCGCAGGCT 
    GAAAATGGCT GGCCTAAGAT CGACGGCGAT GGAGATTAGT TCACCGACAC 
    AACAGAGACA AGTGGCAAAC ATTGTTCAGT GAACCAGTGT ATAGTTTGGA 
    GTCAGGTGTG CTGTTTGCAT CTGTAAAATC CCAACGAAAT CCATACAAAT 
    AAAAAGTAGC TTAGGCCGTG TTTAGATTTC AACTTTTTTT TCAAACTTCC 
    AACTTTTTCG TCACATCAAA TGTTTGGACA CATTTATGGA GCATCAAATG 
    TGGACGAAAA AAACCCAATT GCACAATCCG ACTGTAAATT ACGAGATG

    Gene models with high sequence identity

    1. AT5G45040.1 [+] show detail - Cytochrome c
      E-value: 1e-36; Score: 44.30

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome c domain 4.6e-06
    superfamily Cytochrome c domain 3.4e-06
    ProfileScan Cytochrome c domain 7.142

    See the detailed result >

    AT5G45040.1

    Model type
    Protein coding
    Short Description
    Cytochrome c
    Computational Description
    Cytochrome c; FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR