K20329

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20329

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20329

Determination of introduced cDNA(s)

J033147E22 - Rice Full-length cDNAs - Original: J033147E22

full reading [+] show sequence

GACTCGCCGG TCGCGGCTCT CCCCCGCACG GCCGCACCGG CGCTCGCGGT 
TGCGACTCAG GGAGCCGAGC CGCAGCTGTT GTTGGACGAT GGTGAGGTCG 
CACGCTCGCA GCGCGCACGC GCTCGATCCG GCGGCGGCGG CGGCACAGTC 
TTTGGTTGGG GAGCGACCGA TGAGCAGCAG AGAGAGCTCA ACTGGGGACG 
AGGCGTGCAA TCGCAATCTG GGGCTACTTC ATGTCTTCAG CTGGGGATGG 
GTGGTAGCAG TAGCAGCTCG CGCACCGGCC ACGAATGCGG CACTATCAGT 
TAGTAGCACT TAGCAGTAGA TGCCTGCCGT GATGGCTTCA AAAAGACAAG 
AACGTGGATG AAACAAGTCA GGGAGGTAGC ATTTGATGCT GAGGATTGTA 
TTGACACATT CTGGTGCTAC ATTGGCCATC ATTATGGTGC CAGGGGAGTC 
CGCTGTTATT GTGTACCAAA GGTAGTCTAC ACCTTGAAGA CGTTGAAAGT 
GAGGAACAAC CTGGCCATCA AAATCCAAAG TCTCAGGACT CGTGTGCAGA 
GAGTGAGTGA GCGGAGGCTG AGATACATGC TCAACCCAAC GGGATCTACT 
TCTAAATCAA CCAATGGATC TCTGTCTTCT TCAAACTACA TTGATCAAGA 
GCGCCGATTA TCTGCACTAA ACATCGACGA ATCACGACTT GTTGGAATGG 
CTGATAAGAC AGAAGAAGTC ACCAAGCTGC TAGACGAAGG TCATGTGCCT 
AATCTTAAAG TAGTCTCCGT TGTTGGCTTT GGTGGACTAG GAAAAACCAC 
CCTTGCAATG ACTGTTTACA AGAGCCCAGC AGTGAAAGGG ATCCAGAGCC 
GTGCTTTTGT GGCAGTGTCC CAAAACTATG ATCCCCGAGC ACTTCTGGAA 
TCTTTACTGA AGCAGCTTAT CCAAAGACCC TTTCTCAGAG AGCCAAGGAG 
TGTGGATGAA GAAACTAGTA CTGAAGACCC CCTCAAAGGC ATCGAAACCT 
GGGACATATG CCAACTCATT AATAGGTGCA GAAATTACTT GGAGAACAAA 
AGGTACTTCA TTGTTCTTCA TGACCTTTGG AGGCCAGAAG CATGGATGAC 
TTTGAAGATA GCCTTTCCTG ATAATGATAA ACGGAGTAGA ATACTAATTA 
CTACAAGGAA TCACCTTGTA GCTCAAATTT GCTGCTATTA TCCCCATGAC 
TGTATTTACA GCATGGAGCC CTTACCCAGT GAAGAATCCA GACATTTATT 
CTTCAAGAGA GTGTTCAAAT TGGACAAATG TCCTTCACAG TACCAAGATT 
TGGTGGATAT CTCCGATGCC ATATTAAGAA AATGTAATGG CTTGCCTCTA 
GCCATTGTGA GCATAGGAGG AATGCTAGCT CGAATGAAAA ACAAGACATA 
TGCAGAATGG CAGAAGGTGT GTGACAGATT GGACTGTGGG TTAGAGATAA 
ATAATACTGT AGGGGGAATG AGAAAGATAC TCTCTCTTGG CTACAATGAT 
TTGCCCTACC ATCTGAAGGC TTGCTTCTTG TATCTTAGTG TTTTTCCCGA 
GGATTTTGAG ATCAAAAGAG GACCCTTGAT TAGAAGATGG GCAGCAGAGG 
GTTTCATTGG TAGAGTGCGT GGATCAAATT TGGAAGAAAT TGCTGATAAG 
TATTTTGATG AATTTATCAG TAGAAACATC GTTACACCTA TTCGGATTGA 
TAGCAGCGGC GAGGTCCGGA GTTGTAGGGT TCATGACATC ATGCTGGAAG 
TAATCAGTGC CATATCTGTC CAAGAAAACT TCATCTCACT CCTAGGGAAT 
TACAGTTACA GCATAACAGG GCATGACAAA ATTCGGCGGC TTTCCATCCA 
TGTAGGTGGT GGTAAGGAGC AAGATTTCTC ATGTAGGAAC TTATCCCATC 
TACGTTCTTT GACAATCCTA GGCTGCAAGG AGAAACCAAT ACCTATCGCT 
TTGGCTGATC TAACACTTCT AAGGGTGTTA GACCTTGAAG GTTGCGGCTG 
GTTAAGTGAT TCAGATTTGA AAGATATTTG CAAGCTGTAT CTGTTGAGGT 
ATGTAAGTCT TCGAAGCACA AATATTTCAA AGCTACCAAG GACAGTGGGG 
AACCTGAAAG AACTTTTGAC ATTGGATGTA AGAAGCACTT ACATTAGGGA 
GTTACCTGCA ACTATCACTC AGCTCCGGTG TCTCAAACAT CTTCTTGCAG 
GCCGTTACAA GTACTATACA AGGACACATC ATGTGAAACA TTTTGCTTCA 
AAGGAAGCTG TGACTATACC TGCTGGGTTG AAAAATATGA GTGCCCTTCA 
GAGCATTGCT CCTGTAAACA TCTCATCAAG CTTCCGTGCA ATGCATGAAC 
TGGGAGAGCT GTCTCAGTTG ACCAAGCTTT GTGCTATCAA CAGAAAGGGA 
GTAGAGAAAT GGAGACCTTT CGCTACCTCA TTAAGTAAAC TGAGCAATTC 
CCTTCGCCAC CTATCAGTAA TTCATATCGA CAAAATGGAA CATGGGCTTG 
AGTTCTTAAT GGACCTAAGC TCGCCGCCTC TCTTCCTGAA AAAGCTCTAC 
TTTTGGGGAA GAGTGAGTGC TCTGCCTCCA TGGATTTCAT CTCTCAGCAA 
CTTAGTCAGG CTATCGCTCC GAGAAAACTA TCTGGAGAGT GAATTGGTCA 
AGATACTAGG GAAACTTCAT AGTCTTTTGT CCCTCAAACT GTATGTTAAC 
TCATATCTAG GGACAGAACT ATGCTTTGAG CATAATCTTT TTCCGAGACT 
CAAACAACTT ATGATAGATA ATTTAAAAAA TCTTGATGAG CTTAGCTTTA 
AGGGAGGAGC GCCTGATCTT GAGAGACTCA CGTTGGCTTT TGTAAAAGCA 
CCCGAAAGAG GCATTTCTGG CATAGAGAAT CTCCCAAAAC TAAAAGAAGT 
TGAGTTCTTC GGGATTATTG TTGACTCTGT TGTCGAGGGG GTGATAGCTG 
CTGCCAAGAT TCATCCAAAT CATCCAAGAG TTTACAGAGA CGAGACAATC 
GACCCAAGGA GCCTTACTAC AGCATGAGCC AGGAATACAT TCAATCTCCT 
GCTAGGCAGG CGGTTCAGGG CCAACGACTA AGTAATAATG CCAAGGAATC 
TACCGTAGTG ACTAGCAAGG AGGATGGACG GTCATTGGTG AATGGCCTGC 
CCCGAAATTC TAGAGAAATT ACTTCAACTA GCATGGTGGC CCGCGCAGAT 
TGCGCGGCTA GCATCATTAT ATTTTCTCTC ATATAATAGC ATATATGTTT 
TCTCATTATA TTATTCAAAT ATATTAAAAT AACATCATAA TTTTAAATTT 
TGCAATAACT TTACGAAACT ACAAATGTGT AATATTCATA TTGTATTTTA 
TATACGTGTT AGTTATTAAT GATTTTTAGT ATC

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 4e-75; Score: 280.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	NB-ARC	3.5e-57
Coil	coiled-coil	0
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	0.000000004
superfamily	L domain-like	1.3e-38
superfamily	P-loop containing nucleoside triphosphate hyd	0.00000000000014
FPrintScan	Disease resistance protein	9.3e-17
FPrintScan	Disease resistance protein	9.3e-17
FPrintScan	Disease resistance protein	9.3e-17
FPrintScan	Disease resistance protein	9.3e-17
Gene3D	no description	0.000000019

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR