K20333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20333

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Original: K20333

Determination of introduced cDNA(s)

  • J013119C03 - Rice Full-length cDNAs - Original: J013119C03

    full reading [+] show sequence

    Nucleotide sequence: J013119C03 - full reading 
    GCTTCACGAT ACAACCCACA CGGACACGGC CACACCACCC ACCAACTGAG 
    AGCTGAGCAG GCGAGCGAGC GGACATGGCA GCATCGCTCC AAGCCGCGGC 
    CACCCTGATG CAGCCGGCCA AGCTCGGCGG CCGGGCCTCC TCCGCCGCGC 
    TGCCATCGCG CCCGTCTTCG CACGTCGCCA GGGCGTTCGG CGTCGACACC 
    GGTGCCGCCG GCAGGATCAC GTGCTCCCTG CAGTCCGACA TCCGGGAGGT 
    CGCCAACAAG TGCGCCGATG CCGCCAAGCT CGCCGGCTTC GCCCTCGCCA 
    CCTCAGCTCT GCTCGTCTCG GGCGCCAGCG CGGAGGGCGT GCCGAGGAGG 
    CTTACCTTCG ACGAGATTCA GAGTAAGACG TACATGGAGG TGAAGGGAAC 
    CGGCACGGCG AACCAGTGCC CGACGGTGGA GGGCGGCGTC GACTCCTTCG 
    CCTTCAAGGC CGGCAAGTAC AACATGAAGA AGTTCTGCCT GGAGCCGACG 
    TCCTTCACCG TTAAGGCGGA GGGCGTGGCC AAGAACGCGC CACCCGAGTT 
    CCAGAAGACC AAGCTCATGA CCCGCCTGAC CTACACCCTC GACGAGATCG 
    AGGGCCCGCT CGAGGTCAGC TCCGACGGAA CCATCAAGTT CGAGGAGAAT 
    GACGGAATCG ACTACGCCGC CGTCACCGTG CAGCTGCCGG GAGGCGAGCG 
    CGTGCCGTTC CTCTTCACCA TCAAGAATCT GGTCGCCACC GGCAAGCCGG 
    AGAGCTTCGG CGGGCCCTTC CTCGTGCCCA GCTACCGTGG TTCGTCCTTC 
    CTCGACCCAA AGGGCCGCGG TGGCTCTACC GGCTACGACA ACGCTGTGGC 
    GCTCCCCGCC GGAGGCAGAG GAGACGAGGA GGAGCTCGCT AAGGAGAACG 
    TCAAGAACGC CTCGTCGTCG ACGGGCAACA TCACGTTGAG CGTCACCAAG 
    AGCAAGCCAG AGACCGGCGA GGTGATTGGC GTCTTCGAGA GCGTGCAGCC 
    GTCGGACACA GACCTCGGCG CCAAGGTGCC CAAGGATGTC AAGATCCAAG 
    GGGTGTGGTA CGCGCAGCTC GAGTAGGGAA TGAACAAATG TTTTGTGCGT 
    GGCCGGGTTG ATATATCGAT ACATGGAGAG AGGGAAGGAA GGCTGCAATG 
    TGTGTATCTA GTAATGCAAA CTCGATCGGG CTGTTGATGG TTTTAATTTT 
    TAGCTTTTGT TTCTTCCTCT GTTCTCGTGA ACTGATGATC ATATCCCCCG 
    ATGATGTTAT TTGCATTTCG ACAAGCGGAG AGGACATTGT ACGATACATA 
    TATGTGCCTA TCTTCACGAA CATTTGCCTT CC

    Gene models with high sequence identity

    1. AT3G50820.1 [+] show detail - photosystem II subunit O-2
      E-value: 7e-137; Score: 484.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G50820.1

    Model type
    Protein coding
    Short Description
    photosystem II subunit O-2
    Curator Summary
    Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII.
    Computational Description
    photosystem II subunit O-2 (PSBO2); FUNCTIONS IN: oxygen evolving activity, poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, photoinhibition, photosystem II assembly, photosystem II stabilization, regulation of protein amino acid dephosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II manganese-stabilising protein PsbO (InterPro:IPR002628); BEST Arabidopsis thaliana protein match is: PS II oxygen-evolving complex 1 (TAIR:AT5G66570.1); Has 534 Blast hits to 532 proteins in 148 species: Archae - 0; Bacteria - 144; Metazoa - 1; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR