K20341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20341

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20341

Determination of introduced cDNA(s)

J013053E16 - Rice Full-length cDNAs - Original: J013053E16

full reading [+] show sequence

GAATGACTTC TTCTTCCTCC TCCTCTCCAC AGTCCACACT GTTCATCTCC 
TCCTCCCCTC CCTCCCAATT CGATTCCCAA ATCCCAAAAT TGACCACCCA 
AATCCGCGCC AATCCATGGA TTGGATGCCT CCTCCGAAGC CCACCTCGCC 
GCGCTCCCCT CCCCTCCTCT GGGACTGGGC CGACGCCGCC GTGCCGGGCT 
CCTCCTCCGG CGAGGTATCC GCCGCCGCCG CCGCCGCCGC GGCTCATCCG 
GGAAGGCGGC GGAAGGAGAA GCGAGGCAGG GCGGAGGAAG GAGGAGGTGG 
TGGTGGGGAG GTGAGGTGCC AGGTGGAAGG GTGCGGGGTG GAGCTCGTCG 
GCGTCAAGGA CTACCACCGG AAGCACCGCG TGTGCGAGGC CCACTCCAAG 
TTCCCCCGCG TCGTCGTCGC CGGCCAGGAG CGCCGCTTCT GCCAGCAGTG 
CAGCCGGTTC CATGCGCTCT CGGAGTTTGA TCAGAAGAAG AGGAGCTGCA 
GGAGACGCCT GTATGACCAC AACGCTCGTC GGCGGAAGCC CCAGACCGAC 
GTGTTCTCCT ATGCATCGGC AAGGCCGCCG TCGTCATTAT TATTTGATGA 
TAACCGACAA ATAAGTTTTG TCTGGAACAA AGCTCCACTC AGCCATGTAA 
GGCCTTTCGC AATTTCTCCA TGGGAAAGCT CATCTGAAGT TGGGACAACT 
GATGGACATA TTTATTTGGA TAAATCTCAC ATATCCAAAT CTCTCCCAGC 
ATTTAACACC GACATAGATG AGCTCTTACC AATGAAAGAC TTCTCTGCAG 
CCACTATTTG GATGTTCTTC GGTGTCCTTT TTATCCGAAC TGCGCAGGAG 
AGCTGCATGT CATTTCATTA AGGAGAAAAC AATGTACATA TTTTGATGGA 
AGAATGACCA TTATTCCATT TTGCAGGTCC GGACGCATCT TTAACTGCTT 
CAAAATTTGA TGGAGCACCG GATCTTCAGC GTGCTCTCTC TCTTCTGTCA 
TCTAGTTCTT GTGGATTACC TGATCCTGTA CAGCAAGCAT CTCGCGTCAT 
CCAATTCACA GGCGCCAGCC AAAACAACCG GGAACTTCCT CCACTTAATG 
GAGGGAATTC TGCTTCAGCA TCATGTGCCA ATGTACAAAC TATAGCACAA 
CCGGCTCAGC TGGTTCGTTT TACCATGAAT GCTAGCAGCA ATGCTTGTCA 
GTCCAATTTC TTCGGTTTAA ACCAGATAAA CTAAAGGCCT GGACTGAGAG 
CCCGTCGTCG ATTTCGACCA ATATCCACCA AGGTGGCCTT GAGAAGATAC 
AAGAATTGCT TCTATCAACT ATCAGAGTGC AAACAATGTC ACAGTTAATG 
TTGTCATCAT AAATACCGGT ATTGGTCTCC CCTGAACTAA AATCGAACGG 
AGTGATGGCT TGCTTGTGTT TTCGATAATC GTTATGCAGT TCTAATTTTT 
TTTCTATTGT TTTCTGCCAA TGTACCGATT TTCAAACTGT GGGTCTTGTC 
ATTTATACTT GTACAACCTA ATGTCAAAAT GTCATGTATC TTTG

Gene models with high sequence identity

AT5G43270.3 [+] show detail - squamosa promoter binding protein-like 2
E-value: 2e-32; Score: 137.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Transcription factor, SBP-box	3.7e-25
ProfileScan	Transcription factor, SBP-box	31.667
HMMPfam	Transcription factor, SBP-box	2e-37
superfamily	Transcription factor, SBP-box	3.8e-40

See the detailed result >

AT5G43270.3

Model type: Protein coding
Short Description: squamosa promoter binding protein-like 2
Curator Summary: member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.
Computational Description: squamosa promoter binding protein-like 2 (SPL2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 10 (TAIR:AT1G27370.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR