K20343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20343

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20343

Determination of introduced cDNA(s)

  • J033122B04 - Rice Full-length cDNAs - Original: J033122B04

    full reading [+] show sequence

    Nucleotide sequence: J033122B04 - full reading 
    GACGCCCGTA CCTGCCTCTC CCTCCTGCAA ACGGAGGTGG CGCCGCGCGG 
    CGGCGGGATC GGTCTTCCCG ATCGCCGGGG GGCCAAGCCG CCAAGGGGAG 
    TTCACCGCGC GCTTCATCCA CGCGCCCAAG TAAGTTCTCG TTGTTGCTGT 
    ATCTCAGTTT GTCTCGGATT TGCCGGGAAC TCTCGCACTG GGGTCATGGG 
    GTTGGTGGTT CGTCCGTGTT CTCTCTTTTT TTTTTTGAGA TATTTATATC 
    CACTTGTCAG CACTCAGCAC TGATACGGAG TAATCAAGCT GACGAGGGAA 
    GATGCCGTTG AGACAAATCT TGGATTGCAT TGAATTCATT CAGATCAAAC 
    GAAATCTCTC CTGCACCATC TCTTGCTAAG CATAGCACTG CCTTATTTCA 
    CAATTACTTC CTCTGTCCCA AAATAAGTGC AATTTTAGCA CTATTCATGC 
    TAAGTGCAGT TTTAGCACTA TTTAAGTTCA ACGTTTGACC ATTCGTCTTA 
    TTTAAAAAAA GATTATGATT AATATTTTTA TTGTTATTAG ATGATAAAAC 
    ATGAATAGTA CTTCATGTGT GACTAATTTT TTTAATATTT TTTATATTTT 
    TTTTCAAATA AGACGGATGG TCAAAGTGCT AAACACAAAT ATCTATGGTT 
    GCACTTATTT TGGGACTTAT TTTGGGACGG AGGTAGTTAG AGCTGCAAAT 
    TCTTGGCGTT TTATTTGTGG ACAATGCGCT GTATCTTTAC TGCGATGGAA 
    CCCTTAGCCA TTTGTGCTAC TCAACTTCTT CTTTTGAGCG AATTGCATGC 
    CATTCCATCT GCTTGCAGAT CACTAGTCAT CTGCTGCTGT CTGCTTCCAT 
    GGTTAAGTAG GCATAGTGTT AACAAGATCA AGACGTATGA TAAAGTTCAG 
    TAAGACACCT CCTTTCATCT TCAACTCAAT TAGAAAGTAC TAAATTTGAC 
    TGCTCCAAGG AGATATTGAT GGGTGTGTAT AAACATTGCT CGTTTAAAAA 
    ATTAACATTT TGAATCTCTC ATTGATAAAG AATGTACCAC TCCCAGCACA 
    TATTTTACAA ATTAGTGTAC AGATGTTTAA TTCCAACTAT AAAGGAAAGG 
    AAGAGAACAA ACCACCAAAA TTTACAAGAC CACTACAACA AACATTTCGA 
    ACTTTTTTTT CATGTTCTAC ACCGATATGC ACAAATTAAT TCGTATATGC 
    AAATCAATCG ATCTAATTCC TAGTTTAGGA CCTGTTTCCT AGTCCCTATC 
    AATCACTATC TCTTCTGGAA GTTGAGCTTC ATGATGGCAA AGCCAAACAG 
    GAAGGCAAAT AACATGGTGA ATGCGACGAT CACCACAGCC ACGAAACCCA 
    GCCAGCTGTG CTTAAAGTCA AAATAGTTCT CCACGAAGAC ATTCACGGGT 
    ATGCCATCAT CCATCGGCGT CACGATATCT CCATATTGCG AGACAATCAG 
    CCCGTATAGT GTCCATGCTA CAGGGCATAT CCAGCAGTAC CATCTCCACC 
    AGACTGGAGT TGCCTGAGCA CACGGTCCAG GGAAAATGGA ATTGAGCTAT 
    AGAAATGATG AAACAAAATT AAATGCAGGG GCCATAAGGA TGGTGGTGGT 
    TACCGGTCTG GAGATGACGA ACCCGGTGAA GAGGTTCCAG ATGGCATAGA 
    AAGCCGAGGA GACGATTGAG GCGACATGGT AGCTTGGTGT TAGGCCCACA 
    GCCATCATGC CGTAGAATGT GAAGTATAGC AGCGTGAAGA ACATGAAGAA 
    GAGGTACCAG AAGAATTTAG CCACTGTCCA TTGGAACCCA ATCATCGAGT 
    ACACTATGAT GCTATATATG ACAGACTGAA CAAGTGTGTA CGGGAATTCA 
    ATGGCAACCT GCAAGGGAGA AGTTGATAAC TGTCAGGTTT CTCAGCAATA 
    CGATAACCAG CAGGCAAAGC AGTGTCAGGC ATTGTCGAAT TGATATGAGA 
    GCTATGTACC TGCCCAAATG CATACGGGAG AGCTGAATAC ATCCCAGCAG 
    CTCTTTCACG GTAAAAGACT GTCCTCTCCA CTGATACCAC TGGCTGAACT 
    GACTGACCGT TTAGCACGCC AATAAACAGC ACTGCAGCAT ACATTGACCC 
    CATGGCGTTG AACAAGTCTT GTGACTGGCC CCTGGATCAA GAAGCCAAAG 
    ACGCGTAAAT TACATTTTGA AGATGGTTTA GTCATACGCC ATATATGTCT 
    ACATGGTAAG TGCATACATT TTACCACCAA GGTCCCAGAA GATGGTACCG 
    AAGATGAGAG CTATGACAGT AGTGAAAAAT AGTCTTATGG CATTGTAAGG 
    AGGATTCCTC CAGTATGACA GGTGCTGCTT CCACAGGCAT GCCAGGCATT 
    GAATTAAGAA AGACTGTGAG TACTGTGTAG GAAAATATAG TTCACTTGAA 
    CCTGGCGGTG GTGTGCTCAG TTCCTGTATC AATGCCTTGT TCCTCCTATG 
    AATATCAATT GCCAATGTTC AGATTGC

    Gene models with high sequence identity

    1. AT1G15520.1 [+] show detail - pleiotropic drug resistance 12
      E-value: 1e-95; Score: 91.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ABC-2 type transporter 0.00000000013
    HMMPfam ABC-2 type transporter 1.3e-16
    HMMPfam ABC-2 type transporter 0.00000000032
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER (PDR) 3.5e-44
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 3.5e-44
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER (PDR) 5.9e-42
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 5.9e-42
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER (PDR) 8.8e-34
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 8.8e-34
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER (PDR) 6.7e-29
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER 6.7e-29

    See the detailed result >

    AT1G15520.1

    Model type
    Protein coding
    Short Description
    pleiotropic drug resistance 12
    Curator Summary
    ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.
    Computational Description
    pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR