K20345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20345

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20345

Determination of introduced cDNA(s)

  • J033128M15 - Rice Full-length cDNAs - Original: J033128M15

    full reading [+] show sequence

    Nucleotide sequence: J033128M15 - full reading 
    AAGGTGATCA ATCGGCGGAA AATGCAATTA CTTGGTGTCG CTTGCCTGCT 
    TATAGCTTCT AAGTATGAAG AGATATGCCC ACCCCAAGTA GAAGAGCTCT 
    GCTATATTTC TGACAATACA TACACTAAGG ATGAGGTTTT GAAAATGGAA 
    GCTTCTGTCC TGAAATACTT GAAGTTTGAG ATGACTGCAC CTACAACAAA 
    ATGCTTTTTG AGGAGATTTC TACGAGCTGC TCAAGTATGC CATGAGGCTC 
    CAGTTTTGCA TCTTGAGTTC CTAGCTAATT ACATTGCGGA GCTATCACTT 
    CTGGAGTACA GCTTAATTTG CTATGTACCG TCACTTATAG CTGCGTCTTC 
    TATTTTCTTG GCGAAGTTTA TCCTTAAGCC AACAGAGAAT CCTTGGAATT 
    CAACACTTTC ATTCTACACA CAATACAAAC CATCCGACCT ATGCAATTGT 
    GCAAAAGGAC TACACCGGCT TTTCTTGGTT GGCCCTGGAG GCAACCTTCG 
    AGCAGTTAGA GAAAAATACA GTCAACACAA GTACAAATTC GTAGCAAAGA 
    AGTACTCTCC ACCATCAATT CCAGCAGAGT TTTTCGAAGA TCCAAGCAGC 
    TACAAGCCTG ATTAACTCCA GTTACTCCCT GAAGTCTTGC AGTAGCCCCG 
    AATGGTAGGC TGATTTGTAC AGATTGCTCA TGCGCAAGGC AAGCACACGC 
    CACGCGCCCT TGTGTTAGCA GATTGGTAGA TTGTACATTG TAGATGAAGT 
    GGTAGAGCTG TACATCAAGT TGGCCTCATT TGTGTATGCA CGGCAAGTGC 
    ATTTCTCTGG CGGCGGCTTG CTTACAACCA CAGTGCATAA AGCTGCTAGT 
    CCTTTCCTAC TCTATCCATT TTGCTTGCTC CAAGCTTGTT TGATATGATT 
    TTACCGTGTT ACTGTAAACA AAATGGATAT GCTGGATAAG AGATAAATGC 
    CTGAGGGCAA GTGAAGTATG AATATATTTG TCCTTCTCAG TGGGATG

    Gene models with high sequence identity

    1. AT1G44110.1 [+] show detail - Cyclin A1;1
      E-value: 1e-75; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cyclin-like 3e-40
    superfamily Cyclin-like 2.1e-22
    HMMPIR Cyclin, A/B/D/E 0.000000000000004
    HMMSmart Cyclin 0.58
    HMMSmart Cyclin 3.3e-19
    HMMPanther G2/mitotic-specific cyclin A 3.2e-105
    HMMPanther CYCLINS 3.2e-105
    Gene3D Cyclin-related 6.7e-42
    HMMPfam Cyclin, C-terminal 1.3e-31
    HMMPfam Cyclin, N-terminal 5.2e-22

    See the detailed result >

    AT1G44110.1

    Model type
    Protein coding
    Short Description
    Cyclin A1;1
    Computational Description
    Cyclin A1;1 (CYCA1;1); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCLIN A1;2 (TAIR:AT1G77390.1); Has 4548 Blast hits to 4417 proteins in 376 species: Archae - 0; Bacteria - 4; Metazoa - 1999; Fungi - 561; Plants - 1168; Viruses - 34; Other Eukaryotes - 782 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR