K20347

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20347

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20347

Determination of introduced cDNA(s)

  • J033046K22 - Rice Full-length cDNAs - Original: J033046K22

    full reading [+] show sequence

    Nucleotide sequence: J033046K22 - full reading
    AAGGCTGTTC GCTGCCTACA AATCGCAATT CCCCAATCCA TATTCCCTTC 
    CCTTCCTTTC CTCCTCCTCC ATCTCCACCC TCCCGCCGCC GCCGCCGCCG
    CCGTCGCCGC GGCACACTCC CCGGGACCAG CAGAGGCCGC CGCCAACGCC
    GCGGGGGCAG CTGCGGATAA GGTTGCTTGA AGCAGTGGAA GATTTCCTGG
    ATGGCTTGTG CTGCAGCAAC TGATGATTCT GCTGCGAGCA CGGCTGGGAT
    GAGGGACGAG GATCGTAGCC TGTCTGGCGA GTCGTTGTCC GAGTGGCGGT
    CCTGCGAGCA GGTGGAGAGC GAGAGCCCTT CGACGTCCCC GCCCTTTTGG
    GACACTGACG GTGATGACGA TGATCCTGGC CCCAAACCTT CAGATTTATT
    TGGGCGGTAT ACTTGGAGAA TTGAAAATTT TTCAAAGGAG AAGAAGAGAG
    AAATGAAAAG CGAGCCATTT GAAGCTGGTG GTTACAAATG GTATATTCTT
    GTATACCCTC AAGGATGTGA TGTTTCCAAC CACCTATCAC TTTTTCTCTG
    TGTTGCTAAT CATGACAAAC TTCTCCCAGG GTGGAGTCAT TTTGCGCAGT
    TCACTATAGC TGTAGGCAAT ATAGATCCTA AGAAAGTAAA ATACTCCGAT
    ACTTTGCATA AGTTCTGGAA GAAGGAGCAT GATTGGGGAT GGAAAAAATT
    TATGGAGTTG TCGAAGATTC AGGATGGCTT TCTTGTTGAT GATGTTCTTG
    AAATCATAGC TCAAGTTCAA GTTATCAGGG AGAAGGTGGA CAAACCATTT
    CGTTGCCTCG ATCGCCCTTA TCGAAGAGAA TTGCTCCGTG TTTATACGAC
    AAACATCGAG TCAATATACC GCCGTTTTGT TGAGGAACGA AGAAATAAAC
    TTAGCAAGCT GATTGAGGAC AAAATGAGAT GGTCCAGTTT TTGTGCTTTC
    TGGTCAGCAA TTGACCCAAG TACTAGGCAT CGGATGTCTA GAGAGAAGAC
    TGATGTCATA TTAAAAGTAT TAGTGAAGCA TTTTTTTGTG GAGAAAGAGG
    TTACTTCAAC ATTAGTGATG GATTCTCTGT ATACGGGCCT GAAGGTGCTT
    GAATACCAGA GCAAGGGCAA GAAAGGGAGA ACGATAGCTG ATTTGGATGA
    ACTGCCTGCA CCCATGATCC ATGTTGGCAT GGACATGTTT GTTTTGGCCA
    GTGATGTTAT AGATTTGCTT GAGAGAGCAG CCTTAGAACC ACTGCCTTGT
    CAACCTGTGT CTCCAAAGGA TGACAAATGT TCCCAGAGTC GCATGAAGGA
    TGGTGCTTCT GGTGAGGTTA ACAAAATTTC CATGGAGCGC GAGGAAAGAC
    GCCTAACTGA GCTTGGTCGG AAGATACTTG AAACATTTGT GCTATCTCAT
    ATATTCAGTG GAATTGAAGT TGCGTACCAA GAAGCTGTTG CTTTGAAGAG
    ACAAGAAGAG TTAATTCGAG AGGAGGAGGA AGAGGCATGG CTTCTTGGAA
    ATGAGATGAA GGGGAAGCGT GGGGGTGGTG CTAATGAAAA AGATAAGCGT
    GCAAAGAAGA AACAGGCCAA ACAAAAGAAG AACAATCGTA AGATTAAAGA
    CAAGGAAAGA GACGAAAAAT TTGAAGCAAA GATTCTGGAA AGACTTCATG
    ATGAAACTGC GATTGATGAT AGTGATGGCT TATCATCAAA GCAGGCCGAA
    GAAGTGACAA CAAAGGTTGA AAACTTGGAA GAAGGTGCTT CAGATAGGCA
    AGGTGATCTA GATAGTTCAG AAATTGCTCA CCGACCAGAC TCAGGTGACA
    AGTATCCTAG ACAAATGAAT GGACTGAGTG ATGTTACTGG CAATGCACAA
    AAGGTAAAGA AGGCCTCCTC TATGGAGGCT AACTCACCAG TCTTTCTGGC
    TGATTCTGTT GCTGCAAGCG GCACTCATAG CAGAGGAAAT AATTTGTCAG
    ACAGTAAGAA CCGCATGACA CCAAATAGAG GGAAAAATCA GCGTAACAAG
    GGCATAAGCA TTATCAGCTT TTCTGAGGAA GGTGAGGGTA TTCCCTCGAG
    TTCTACTGGT GGTTCGGCTC GTTGTAGTTC TAGTTGCGGC ACATCTGCAA
    AGTTGGACCA AGATACCGTT CTACTCACCT TGAAGGATAA ACTCCGTAAG
    CTGGGGCAAC GTCTACATGA GAAAAATATG GAGGGGCGAA AACTTCTCCA
    AGCTCATTTT GAAGCCATGG AAGCAAAGAC GAGTGGTTCA TCTCCCTCAT
    CCAGTCCTTT GGATGAAACA CCTGATGTTG TGAAGAGCCC TGAGCAGTCT
    GCAGAAGGTA CAACAGATGC AAAAGCTAAT GGAACACCAA ATAAGGATGA
    ACCCGTGACA AATTGCGTGG CAGAGGAATC TGTTTCAGTC ATGCCAGGCA
    CAAAGAGTAC TGAAGCTTTA TCTGGCATGG CCCTTGCCAA GACAAAAGTT
    GAGCCAGTTT CAAATAAAGA TCATGTTCCA AAACCAACAT TGCAAGCCAA
    TAGAGCATCT GCT

    Gene models with high sequence identity

    1. AT5G43560.2 [+] show detail - TRAF-like superfamily protein
      E-value: 8e-135; Score: 478.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TRAF-LIKE AND MATH DOMAIN-CONTAINING 3.4e-115
    HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 3.4e-115
    Gene3D TRAF-type 0.0000053
    HMMPfam MATH 9.8e-20
    Coil coiled-coil 0
    HMMSmart MATH 0.000000000000018
    superfamily TRAF-like 5.9e-28
    ProfileScan MATH 29.98

    See the detailed result >

    AT5G43560.2

    Model type
    Protein coding
    Short Description
    TRAF-like superfamily protein
    Computational Description
    TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR