K20347

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20347

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20347

Determination of introduced cDNA(s)

  • J033046K22 - Rice Full-length cDNAs - Original: J033046K22

    full reading [+] show sequence

    Nucleotide sequence: J033046K22 - full reading 
    AAGGCTGTTC GCTGCCTACA AATCGCAATT CCCCAATCCA TATTCCCTTC 
    CCTTCCTTTC CTCCTCCTCC ATCTCCACCC TCCCGCCGCC GCCGCCGCCG 
    CCGTCGCCGC GGCACACTCC CCGGGACCAG CAGAGGCCGC CGCCAACGCC 
    GCGGGGGCAG CTGCGGATAA GGTTGCTTGA AGCAGTGGAA GATTTCCTGG 
    ATGGCTTGTG CTGCAGCAAC TGATGATTCT GCTGCGAGCA CGGCTGGGAT 
    GAGGGACGAG GATCGTAGCC TGTCTGGCGA GTCGTTGTCC GAGTGGCGGT 
    CCTGCGAGCA GGTGGAGAGC GAGAGCCCTT CGACGTCCCC GCCCTTTTGG 
    GACACTGACG GTGATGACGA TGATCCTGGC CCCAAACCTT CAGATTTATT 
    TGGGCGGTAT ACTTGGAGAA TTGAAAATTT TTCAAAGGAG AAGAAGAGAG 
    AAATGAAAAG CGAGCCATTT GAAGCTGGTG GTTACAAATG GTATATTCTT 
    GTATACCCTC AAGGATGTGA TGTTTCCAAC CACCTATCAC TTTTTCTCTG 
    TGTTGCTAAT CATGACAAAC TTCTCCCAGG GTGGAGTCAT TTTGCGCAGT 
    TCACTATAGC TGTAGGCAAT ATAGATCCTA AGAAAGTAAA ATACTCCGAT 
    ACTTTGCATA AGTTCTGGAA GAAGGAGCAT GATTGGGGAT GGAAAAAATT 
    TATGGAGTTG TCGAAGATTC AGGATGGCTT TCTTGTTGAT GATGTTCTTG 
    AAATCATAGC TCAAGTTCAA GTTATCAGGG AGAAGGTGGA CAAACCATTT 
    CGTTGCCTCG ATCGCCCTTA TCGAAGAGAA TTGCTCCGTG TTTATACGAC 
    AAACATCGAG TCAATATACC GCCGTTTTGT TGAGGAACGA AGAAATAAAC 
    TTAGCAAGCT GATTGAGGAC AAAATGAGAT GGTCCAGTTT TTGTGCTTTC 
    TGGTCAGCAA TTGACCCAAG TACTAGGCAT CGGATGTCTA GAGAGAAGAC 
    TGATGTCATA TTAAAAGTAT TAGTGAAGCA TTTTTTTGTG GAGAAAGAGG 
    TTACTTCAAC ATTAGTGATG GATTCTCTGT ATACGGGCCT GAAGGTGCTT 
    GAATACCAGA GCAAGGGCAA GAAAGGGAGA ACGATAGCTG ATTTGGATGA 
    ACTGCCTGCA CCCATGATCC ATGTTGGCAT GGACATGTTT GTTTTGGCCA 
    GTGATGTTAT AGATTTGCTT GAGAGAGCAG CCTTAGAACC ACTGCCTTGT 
    CAACCTGTGT CTCCAAAGGA TGACAAATGT TCCCAGAGTC GCATGAAGGA 
    TGGTGCTTCT GGTGAGGTTA ACAAAATTTC CATGGAGCGC GAGGAAAGAC 
    GCCTAACTGA GCTTGGTCGG AAGATACTTG AAACATTTGT GCTATCTCAT 
    ATATTCAGTG GAATTGAAGT TGCGTACCAA GAAGCTGTTG CTTTGAAGAG 
    ACAAGAAGAG TTAATTCGAG AGGAGGAGGA AGAGGCATGG CTTCTTGGAA 
    ATGAGATGAA GGGGAAGCGT GGGGGTGGTG CTAATGAAAA AGATAAGCGT 
    GCAAAGAAGA AACAGGCCAA ACAAAAGAAG AACAATCGTA AGATTAAAGA 
    CAAGGAAAGA GACGAAAAAT TTGAAGCAAA GATTCTGGAA AGACTTCATG 
    ATGAAACTGC GATTGATGAT AGTGATGGCT TATCATCAAA GCAGGCCGAA 
    GAAGTGACAA CAAAGGTTGA AAACTTGGAA GAAGGTGCTT CAGATAGGCA 
    AGGTGATCTA GATAGTTCAG AAATTGCTCA CCGACCAGAC TCAGGTGACA 
    AGTATCCTAG ACAAATGAAT GGACTGAGTG ATGTTACTGG CAATGCACAA 
    AAGGTAAAGA AGGCCTCCTC TATGGAGGCT AACTCACCAG TCTTTCTGGC 
    TGATTCTGTT GCTGCAAGCG GCACTCATAG CAGAGGAAAT AATTTGTCAG 
    ACAGTAAGAA CCGCATGACA CCAAATAGAG GGAAAAATCA GCGTAACAAG 
    GGCATAAGCA TTATCAGCTT TTCTGAGGAA GGTGAGGGTA TTCCCTCGAG 
    TTCTACTGGT GGTTCGGCTC GTTGTAGTTC TAGTTGCGGC ACATCTGCAA 
    AGTTGGACCA AGATACCGTT CTACTCACCT TGAAGGATAA ACTCCGTAAG 
    CTGGGGCAAC GTCTACATGA GAAAAATATG GAGGGGCGAA AACTTCTCCA 
    AGCTCATTTT GAAGCCATGG AAGCAAAGAC GAGTGGTTCA TCTCCCTCAT 
    CCAGTCCTTT GGATGAAACA CCTGATGTTG TGAAGAGCCC TGAGCAGTCT 
    GCAGAAGGTA CAACAGATGC AAAAGCTAAT GGAACACCAA ATAAGGATGA 
    ACCCGTGACA AATTGCGTGG CAGAGGAATC TGTTTCAGTC ATGCCAGGCA 
    CAAAGAGTAC TGAAGCTTTA TCTGGCATGG CCCTTGCCAA GACAAAAGTT 
    GAGCCAGTTT CAAATAAAGA TCATGTTCCA AAACCAACAT TGCAAGCCAA 
    TAGAGCATCT GCT

    Gene models with high sequence identity

    1. AT5G43560.2 [+] show detail - TRAF-like superfamily protein
      E-value: 8e-135; Score: 478.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TRAF-LIKE AND MATH DOMAIN-CONTAINING 3.4e-115
    HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 3.4e-115
    Gene3D TRAF-type 5.3e-06
    HMMPfam MATH 9.8e-20
    Coil coiled-coil 0
    HMMSmart MATH 1.8e-14
    superfamily TRAF-like 5.9e-28
    ProfileScan MATH 29.98

    See the detailed result >

    AT5G43560.2

    Model type
    Protein coding
    Short Description
    TRAF-like superfamily protein
    Computational Description
    TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR