K20402

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20402

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20402

Determination of introduced cDNA(s)

  • J023039C11 - Rice Full-length cDNAs - Original: J023039C11

    full reading [+] show sequence

    Nucleotide sequence: J023039C11 - full reading 
    GAGCGCGCAG CGTCTCTCTC TCTCGCTCTC GCTATCTATC TCTGTCCTTG 
    TCACTGTCCG TCCTTGACTC GCTAGCCCAA GAAGAAGACC AACCGGAGAG 
    GGGAGGGGAG GGGAGGCGGA GAGATGGCTC CGAGCTCGTC GTCCTGCCAC 
    GACGCGGCCG CGTCGATGCT GCTCTGCGCC GAGGACAACA GCAGCATCCT 
    GTGGCTGGAG GATGAGGAGG GGGAGGTGGG GGAGAGGAGG AGCGGCGGTT 
    GCCGGTCGAT GGTCGGGGAC CTCGCCGCCG GCGGCGGCGG CGGCAGCGGC 
    GGGGGTGGAG TGGAGGAGGA GGAGGACATG TTCCCGCGGC AGTCGGAGGA 
    GTGCGTGGCG AGCTTGGTGG AGAGGGAGCA GGCGCACATG CCGAGGGCGG 
    ACTACGGCGA GCGGCTCCGC GGCGGCGGCG GCGACGTGGA TCTCCGCGTC 
    CGCAGCGAGG CCATCGGCTG GATTTGGGAG GTTTACACTT ACTACAACTT 
    CAGCTCTGTC ACTGCCTATC TGGCTGTAAA CTACCTGGAC CGTTTCCTGT 
    CTCAGTACGA GCTGCCGGAA GGCAGGGATT GGATGACACA GTTGCTCTCG 
    GTTGCGTGCT TGTCTATCGC CGCCAAGATG GAGGAGACCG TCGTCCCGCA 
    ATGTTTGGAT CTTCAGATTG GGGAACCACG GTTTTTGTTC GAGGTGGAGA 
    CGATCCATAG AATGGAGCTT CTTGTTCTCA CCAACCTCAA TTGGAGGATG 
    CAAGCCGTGA CTCCATTCTC CTACATCGAC TACTTCCTAC GAGAGCTCAA 
    CAGCGGCAAT GCCGCGCCGA GAAGCTGGCT CCTGAGGTCG TCGGAGCTCA 
    TCTTGCGCAT AGCAGCAGGA ACTGGATTCC TAGAGTTTAG ACCCTCGGAG 
    ATCGCTGCAG CGGTGGCTGC CACAGTGGCC GGAGAAGCCA CCGGCGTGGT 
    AGAAGAAGAC ATCGCAGAGG CTTTCACCCA TGTAGATAAG GGGAGGGTGT 
    TGCAATGCCA GGAAGCGATT CAGGATCATC ACTACTCCAT GGCCACCATT 
    AACACTGTGC AACCTAAACC TGCAAGCACC AGGAGAGGCT CAGCCTCAGC 
    CTCCTCCTCC TCTGTGCCTG AGAGCCCTGT TGCGGTGCTG GATGCTGGCT 
    GCCTCAGCTA CAAAAGTGAT GATACTGATG CAGCAACTAT TGCCTCACAT 
    GGAGGAGGAA GAAGGAAGAG TTGCTTTGAT AGCTCCCCGG TCACTAGCAA 
    GAAGAGGAGG AAGCTTAGCA GGTGACTGAC CAGTCAAAGT GCCAAATGAT 
    AGATCACTCT CTCTGTAGTC TGTACACCAC TCATCTCGAC AAAGGCAAAG 
    TCAATTGGTT TCGATTGCAA CGACTGTTAG AAAGAAAGAA CACTGGAAGG 
    GGGCCAAAAG GGAGGGAATT TTGACATGAC GAGAGAGAGC TAGCTAGCAA 
    GAAGTTGCTG ATGAATAAAG AGGTGAGGTT GACAACACCT AATTGCTAAG 
    CTTTTGCAAG CCAGCAAGCC ATGGTGATGA GAGGTGCCCC CAAAGAACAA 
    AGAAAAGCTT TGTAGCAACA TAAAAGCTTG ATGAGTTTCA AAAAAAAAAG 
    AAGAAAAAAA ACATAAAAGC TACATGAGAT GATCAAGACA AAGGATGGTG 
    AGGGGCTTTA GGCAACAAGT CCAAGAACTA GGCATGCACT GACCTGGCTG 
    TGTAGTATTC TTTTGTTCAC TAGCTCTAGT TGCATTAGTT GCAGTATTGT 
    TTTCTTTTTT CCATTTCATT TGTAAGGAGA AAATTAGAGG CGGCAGCACT 
    CCTTTTTGTG ATCAGCAATG ATGATCATCC ACATGAATAA AATAACATGG 
    TGTAACCAGA AAAGAAAATT AACAAGACCC

    Gene models with high sequence identity

    1. AT5G65420.1 [+] show detail - CYCLIN D4;1
      E-value: 2e-44; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cyclin, N-terminal 1.7e-28
    HMMPfam Cyclin, C-terminal 1.5e-09
    Gene3D Cyclin-related 5.8e-27
    superfamily Cyclin-like 8e-37
    PatternScan Cyclin, N-terminal 0
    HMMPanther Cyclin D 2.6e-81
    HMMPanther CYCLINS 2.6e-81
    HMMPIR Cyclin, A/B/D/E 0.0029
    HMMSmart Cyclin 1.5e-12

    See the detailed result >

    AT5G65420.1

    Model type
    Protein coding
    Short Description
    CYCLIN D4;1
    Curator Summary
    Encodes a D-type cyclin CYCD4;1 that physically interacts with CDC2A and is expressed during vascular tissue development, embryogenesis, and formation of lateral root primordia. Its expression is upregulated early during germination.Involved in stomatal cell lineage proliferation in the hypocotyl.
    Computational Description
    CYCLIN D4;1 (CYCD4;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle, response to sucrose stimulus, stomatal lineage progression; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin d4;2 (TAIR:AT5G10440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR