K20406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20406

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20406

Determination of introduced cDNA(s)

  • J013068M17 - Rice Full-length cDNAs - Original: J013068M17

    full reading [+] show sequence

    Nucleotide sequence: J013068M17 - full reading 
    GATTACTCGC AGCGCATCAC TCACAGCTAC ATCCACAAGT ACTAAACCAA 
    TCTCTGCCAG CAGTAGCTCT CAGCTATGGC TGATCCCAGC AAGCTGCAAA 
    TCACACCCTG TGGCATGCTT GTTCAGGGCA ACCAGATCAA CTTCACCAAA 
    CTCTACCTGC ACCACACGCC GGCTGGTCCA GAACAAAACC AGTCGGCGGT 
    CACAAGCAAT GACAAAAAAA CCGGGTTGGG TTGCATTGTC GTTAACAACT 
    GGTCAGTATA TGACGGAATC GGCAGCGACG CCAAGCTTGT TGCCTATGCA 
    AAAGGCCTCC ACGTTTTTGC GGGTGCCTGG CACAACTCCT TCAGCCTAGT 
    GTTCGAGGAT GAAAGGCTTA AGGGGTCCAC GCTTCAGGTG ATGGGGCTAA 
    TTGTCGAAGA AGGTGATTGG GCTATTGTTG GGGGCACAGG ACAGTTTGCT 
    ATGGCAACTG GTGTTATCTT GAAGAGAATG CAAGAACAAA AACAATACGG 
    AAACATAATA GAGCTCACTA TCAATGGGTT TTGTCCTCTC TTAAAAGGGT 
    CACAGTGCCC TGTCACCAAG ATTGGGCCAT GGGGTTCATC TCATGAAGGG 
    ACAGTTCAAG ACATCACTGA GTCTCCAAAG CGTCTCGAAA GCATCACATT 
    ATACCACGGC TGGTCTGTTG ACTCAATCTC GTTTACTTAC CTTGACCATG 
    CCGGAGAGAA GCACAAGGCA GGTCCATGGG GTGGTCCTGG CGGGGATCCC 
    ATAATGATTG AATTTGGCAG TTCAGAGTTT CTCAAGGAAG TTTCTGGAAC 
    GTTTGGCCCA TATGAGGGCA GCACCGTTAT AACATCTATT AATTTTATCA 
    CCAATAAGCA AACATATGGC CCATTTGGAC GACAGGAGGG AACCCCTTTC 
    AGTGTCCCAG CGCAGAATAA CTCCAGTATA GTGGGTTTCT TTGGGCGCAG 
    TGGGAAATAC ATAAATGCAG TTGGTGTCTA CGTGCAGCCG ATCTAACTTG 
    TCAAAATAAG TATTCCGTGT TTGAGTTTCA CGTGTGTTTT CTGCAGTAAA 
    CAAATAAGAT GGGGGTCCTC CCTATCATTC CTGTTGTGAT GAGTGATGCT 
    TGGTCGCTGG AGTCCTTCTG AATTTACAGT CGTGTCCTAT CAGTTGTTTC 
    TGTCTGTAGT GTGTTGCATG CATCAATAAA GATCTTCATT GAAGGTTGGT 
    TGTGTG

    Gene models with high sequence identity

    1. AT1G19715.3 [+] show detail - Mannose-binding lectin superfamily protein
      E-value: 4e-17; Score: 86.30

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Mannose-binding lectin 1e-41
    superfamily Mannose-binding lectin 3.6e-42
    HMMPfam Plant disease resistance response protein 1.8e-31
    HMMPfam Mannose-binding lectin 2.1e-30

    See the detailed result >

    AT1G19715.3

    Model type
    Protein coding
    Short Description
    Mannose-binding lectin superfamily protein
    Computational Description
    Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1).
    Link
    InterPro Scan - TAIR