K20409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20409

Determination of introduced cDNA(s)

J023050A15 - Rice Full-length cDNAs - Original: J023050A15

full reading [+] show sequence

GTTTATCTGG ATTTCATGCT GAATTTACTT TTGAAGTATG CATACACACA 
AAACCACTTC ACGGCTTGAC TTCATCTTTC CCTTGTCAGC AAAAATTGTT 
TGAGACATGT CATGTTCTTT TTACTCTTTT GTACTTTAGG GAAGGAGCAA 
AAGTTACATG GGGTTACATT AATAGAATCT TGGGTCAACC TTCACTGATC 
CGTGAATCAT CTATGCCAAA GTTTCCACTT TCAAGGTTTA AGGCTCTCAA 
ATCTACTTCA GCATCTCTGT CAGGAGGTGC AGGCTTTGAG AATGTTATTC 
TTCATCCTTC ACTGAAACGG AGGATTGAAC ATCTTGCACG AGCTACAGCA 
AATACAAAGT CGCACGATGC ACCATTTCGC AACATGCTGT TCTATGGTCC 
CCCTGGAACT GGGAAAACAT TAGTTGCTAG GGAGATGGCA CGCAAATCTG 
TAAGTTTTCA ATAGATCTAA TTGGCTAATC TATTCTGCTC CATTCTTCGA 
GAAATATCAG GCTTATGGAT CTTCTATAAA GAACCTTGTT TTCTGGATTT 
TTTTTAATAC AAAAATATGT ATCCGTCAAC TTCAGTTATA CAACAATTGT 
ATAATCTTAC CATTGCATCC TTTATGTGAC AGGGCTTGGA TTATGCCATG 
ATGACGGGAG GAGATGTTGC ACCCTTAGGA TCAGAAGCTG TTACCAAAAT 
ACATCAAATT TTTGACTGGG CTAAGAAGTC AAGGAAGGGC ATGCTGCTTT 
TCATTGATGA GGCTGATGCG TTCTTGTGCG AGTATGTTCA CAACTTAATA 
TTTAAGCATT TGTCTGACCA CTGATTTTTT TTTTCACAGA TAGTGATATG 
CATGTTAATG AGCTAATCCT GAGGATATTC CCAATTCTTA AGCTTGACTT 
GAACTAATTT TGAGCCTGAC AGTACATCCA ATCTCTTTGC AGCCACTGAA 
TTCAAACAAA GCGCAACAGC ACCCACATGA GCGAAGCTCA GCGGAGTGCT 
CTCAATGCAC TACTATTTCG AACTGGAGAC CAGTCGAGGG ATATTGTCCT 
TGTCCTTGCA ACAAACCGAC CTAGTGATCT TGGTGCTGCT ATTACGGACC 
GCATTGATGA AGTTATTGAG TTCCCTTTAC CTGGGGAGGA GGAGAGGTTC 
CAGCTGCTCA GGTTATACTT AAACCACTAT ATGCTCAAGG AAGATGGAAA 
AAACTCGTTT TGGGACTCAC TGCTGAAAAA GCAACGGCAG AAGATACAAG 
TTAAGGACAT AAGTGATGAT TTGCTCAGGG AGGCTGCCAG GAAGATCAAT 
GGATTCTCTG GCAGAGAGAT TGCGAAGCTT ATGGCCAGTG TGCAAGCTGC 
TGTTTATGGC CGCCCTGACT GTGTGTTGGA TCCCCAGTTG CTTATGGAGG 
TAGTTGAATA CAAAGTGGCT GAGCATCATC AGCGCATCAA GCTTGCTTCT 
GAGACTTCAA CTTGAGCAAT GTTATAGATT TTATCAGAAA GCAGCAGTCC 
TTTTCAGATC TACTGTCCCC ATATATATGT TCTGATATGA GGAATGGAGT 
G

Gene models with high sequence identity

AT2G18330.1 [+] show detail - AAA-type ATPase family protein
E-value: 2e-61; Score: 234.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	ATPase, AAA-type, core	3e-05
HMMPfam	ATPase, AAA-type, core	6.9e-06
Gene3D	no description	2.1e-05
HMMPanther	PUTATIVE ATP-ASE	8.8e-41
HMMPanther	PUTATIVE ATP-ASE	1.7e-70
HMMPanther	PUTATIVE ATP-ASE	9.4e-32
superfamily	P-loop containing nucleoside triphosphate hyd	1.2e-18
superfamily	P-loop containing nucleoside triphosphate hyd	7.9e-11

See the detailed result >

AT2G18330.1

Model type: Protein coding
Short Description: AAA-type ATPase family protein
Computational Description: AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G36580.1); Has 47815 Blast hits to 38452 proteins in 3171 species: Archae - 1435; Bacteria - 14558; Metazoa - 11715; Fungi - 4870; Plants - 3045; Viruses - 138; Other Eukaryotes - 12054 (source: NCBI BLink).
Link: InterPro Scan - TAIR