K20423

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20423

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20423

Determination of introduced cDNA(s)

  • J023020B16 - Rice Full-length cDNAs - Original: J023020B16

    full reading [+] show sequence

    Nucleotide sequence: J023020B16 - full reading 
    AGCCGCCCCC CAAACACACC ACCACCCAAC ACTATCGGAA TTGGTTCGGG 
    AGCAGGTCAA GCAGGAGGCA TGGCGGCGGC GGCGGCGGCG AAGATAGCGC 
    CGTCGATGCT CTCGTCGGAC TTCGCCAACC TCGCCGCGGA GGCCGACCGC 
    ATGGTCCGCC TCGGCGCCGA CTGGCTCCAC ATGGACATCA TGGACGGGCA 
    CTTTGTTCCT AATCTTACTA TTGGAGCTCC AGTGATTCAG AGCTTGAGGA 
    AGCACACCAA GGCATATTTG GACTGCCATC TTATGGTGAC CAATCCTTCG 
    GATTATGTAG AACCATTAGC AAAAGCTGGT GCCTCAGGTT TCACATTCCA 
    TATAGAAGTA TCCAGAGACA ATTGGCAAGA ACTCATCCAA AGTATCAAAG 
    CAAAGGGTAT GCGACCGGGT GTATCATTGA GGCCAGGCAC TCCTGTGGAG 
    GAAGTTTTTC CCCTGGTGGA GGCAGAAAAT CCTGTTGAAT TGGTTCTTGT 
    TATGACAGTT GAACCTGGCT TTGGTGGTCA GAAGTTTATG CCAGAAATGA 
    TGGAAAAGGT GCGTGCCCTG AGAAAGAAGT ACCCATCCCT TGACATCGAG 
    GTTGATGGTG GTCTGGGTCC TTCCACCATT GATGTGGCTG CATCTGCTGG 
    GGCTAACTGC ATTGTCGCTG GAAGCTCAAT ATTTGGAGCA GCTGAACCAG 
    GAGAGGTCAT ATCGGCACTA AGGAAGAGCG TTGAAGGATC TCAGAACAAA 
    AGCTGATCTG TGGTTTTGTA CTCGGTTTCT ATTGTAAACT AGGGCCACTC 
    TGCACGTCTT CTTTACAGAG ATCCCCAGAT TGCACTACGT GAGCTGTTGA 
    GAGATAATAA AATGTGCCCT TGGCAGTTGG CACTGATTCC AGTGTTACTA 
    AATGTTAAAA CTCTTGGGTC CGTTTTTGAT GGACAAGTCA CAAGTAAAGC 
    TTAATGATAC TTT

    Gene models with high sequence identity

    1. AT3G01850.2 [+] show detail - Aldolase-type TIM barrel family protein
      E-value: 4e-102; Score: 368.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribulose-phosphate 3-epimerase 8.6e-72
    PatternScan Ribulose-phosphate 3-epimerase 0
    PatternScan Ribulose-phosphate 3-epimerase 0
    HMMTigr Ribulose-phosphate 3-epimerase 1.6e-89
    Gene3D Aldolase-type TIM barrel 2.9e-80
    HMMPanther Ribulose-phosphate 3-epimerase 1.6e-92
    superfamily Ribulose-phosphate binding barrel 1.2e-75

    See the detailed result >

    AT3G01850.2

    Model type
    Protein coding
    Short Description
    Aldolase-type TIM barrel family protein
    Computational Description
    Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G63290.1); Has 9076 Blast hits to 9073 proteins in 2640 species: Archae - 49; Bacteria - 5613; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2958 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR