K20426

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20426

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20426

Determination of introduced cDNA(s)

  • J013146P10 - Rice Full-length cDNAs - Original: J013146P10

    full reading [+] show sequence

    Nucleotide sequence: J013146P10 - full reading 
    GTCTTCATTT CCACACCGAG GAAGCCAGGG AGAGAGCTTC AGCTCTCCCT 
    CTCCACCTCT TGCTCGTCGT CGACCGCCAA GAAGGAGGAG CTCGCATTCA 
    TCGTCGAGCC ATCGTCATCA CCAACTCTTT CTCGTTCCAT ATTCCTCACT 
    TCATGCCTAC CACTTTACCC TTTGACACCA TCTCATTTCA TCCATTGCAG 
    CGACGGAAAC GCCGCCGTGG CCCCCGGAGC TCTGCGCACC GCCGCAGCCG 
    ACATCGTCGT CGTTCCGACC GCTGTAGACC AAGCCGAGCC GAGCCATCAC 
    GCCAACGTCT TCTCCTTGAA GTCCTCTTCA AAACCCCTCA ATAATCCCAG 
    GCAATGGCGC AGCAAGTACG GAGATCGGCC ACCGTCTTCT TCACCTCCGG 
    TCGCCGTCGC CATTGTCGAT TCCGCCTCCT CCGATCTTGG AGTCTTTTGA 
    GCTGTCGCCG TCAACCCGAA GGAGTTTGCC GCCGCCGGAC CTGTTCGCGA 
    GCTATTACGG ATGACCAAGC TTCGCCAACC TTTTCTAGAA TCTCGCTTTC 
    CCTCCGGTGA AGCGGCCGCA TGAGGACGAC CTCGGCGCCG GTGACGTGCT 
    GACCTTCAGG TTCCACTCCC TCGCCGTCTT GAAATTATTC GACCGCATCC 
    GCGAGTACCG TCTGCACGAT TACCGGTACC AGGCAACGCG AGGCTGGTAC 
    AGCTCCGGGA CGGCGCCGGA GGATGCTCTT CTTCCCTGTG CGGTTGCTCG 
    ACCACCGAGG ATGTATGGGT GCGTGATCGG GGTGCAGCGC GGTCGGACGG 
    TGGAGGTCGT CGACACCTCC GACATCTTGC TCGACACCGA CCCCGGAACC 
    CTCGACCGCG ACTTGTTGAA GAAGAAGCTC GAGACCTACA AGAAGGCGTT 
    CCCTGGCTTG GCCATTCTTG GGTGGTACTC CATTGACACT CATGTGACGA 
    ACACCGATAT GGAAACCAAC CAGGCTTTGA TGGATGCTAG TGGAACAACC 
    TTTTATCTTC TATTCAATCC TGCAATGAAC CTTTCCCTGA AGGATCTCCC 
    AGTGACTATT TATGAAAAAG TGCACTCTAC CAATAGGAGT CCCACTCCGT 
    TAATCTTTGT CCAAGGCAAA TATAAAACTG AGACTGTAGA GGCAGAGAGG 
    ATATCTTTAG ACCATACGTG TCCTGTAGTT TCTGATGTTA GTGTGCCACC 
    TCTTGTTGGA AAAGGGCAAC ATGCAAATAT TATGCAGACT TCTGGATTTA 
    AGCTGATGCT GTTTGAAATT CCTTCTGGTT TCGCGATGTT TGAAGTTTCA 
    CAGGAACTGA TTGCACGCCC TAAGGACATA TGGGCACGAT TTGCTTATCA 
    GGATGACATT ACAAATGTTA TTGTTACCCT GGGTTCTATT CAGATCCATA 
    ACAAATCTGT TGCTAGGGAT ATTATTGTTG GTCCTGGTGA CGAACTGAAA 
    GAATTTATCC TAAGCTTTTG CACTCACAAC TACTTAATTG TTCAAGATGT 
    AGAGCTTAAA GATGTTATCG AGAAGAAACT TAATATCTAT TGTTACTGTA 
    ATCCAACTGT TGTCGGTGAA TTGACATGGG GACTGAACTA TGTCCTACAT 
    AAGTTGTTAC CTCAAGAGCA AAGTTTAACT CATGAGCCTT ATCTTCCACT 
    AAGCAAGGCA ATGTCTAAGC AGATAAAAGA ATATGGGTTC AAAATCTCGC 
    CACGAGAGAT TGACAGAGAG TTCCTAAGAG CTATGAGTTT TTTAAATTAT 
    TTGGGGTATA TGTCAGAGCG TTATTCACTG CTGCTAGATC ATTTGTTTGG 
    ACAATATCGT AAGAATAATA TGTCCGACAT TGAATTTGCT AAATCAATTG 
    CATCTCATCT TCATTCCTCT GAGGGAATTG TACCAAGAGA TGAGAGATAC 
    ACTAGAGCAG AGATTATGGA GTTCATTGAC TTCATAATTG CAGCTCCTGA 
    AAACAGAAGC CGGACGCTAT CGTTCCTGCG GCGCATCGAG GCAGCTTCTA 
    TTGATGATTC TCCTCCACCG CCTTCACTGT CAGGAGGGAT GGGTGTTTCG 
    TTGTTGAAGC GTCTTCGTTT GGATTGGATA ACTGTTTGTT GTCTAGGATG 
    TGCAGTTGCT CTTTACCCTT TCTACCGCAG AGTATGAATG ACTTTGTTAT 
    AAAATTCACT ATGTTTTGAG GACAAATACA TATTCTCTGA CCTGCTTGAT 
    TAGTACC

    Gene models with high sequence identity

    1. AT4G26430.1 [+] show detail - COP9 signalosome subunit 6B
      E-value: 6e-36; Score: 149.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIGNALOSOME SUBUNIT 6 2.7e-37
    HMMPanther EIF3F-RELATED 2.7e-37
    HMMPfam Mov34/MPN/PAD-1 1.2e-07

    See the detailed result >

    AT4G26430.1

    Model type
    Protein coding
    Short Description
    COP9 signalosome subunit 6B
    Curator Summary
    one of two genes encoding subunit 6 of COP9 signalosome complex
    Computational Description
    COP9 signalosome subunit 6B (CSN6B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6A (TAIR:AT5G56280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR