K20426

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20426

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20426

Determination of introduced cDNA(s)

  • J013146P10 - Rice Full-length cDNAs - Original: J013146P10

    full reading [+] show sequence

    Nucleotide sequence: J013146P10 - full reading
    GTCTTCATTT CCACACCGAG GAAGCCAGGG AGAGAGCTTC AGCTCTCCCT 
    CTCCACCTCT TGCTCGTCGT CGACCGCCAA GAAGGAGGAG CTCGCATTCA
    TCGTCGAGCC ATCGTCATCA CCAACTCTTT CTCGTTCCAT ATTCCTCACT
    TCATGCCTAC CACTTTACCC TTTGACACCA TCTCATTTCA TCCATTGCAG
    CGACGGAAAC GCCGCCGTGG CCCCCGGAGC TCTGCGCACC GCCGCAGCCG
    ACATCGTCGT CGTTCCGACC GCTGTAGACC AAGCCGAGCC GAGCCATCAC
    GCCAACGTCT TCTCCTTGAA GTCCTCTTCA AAACCCCTCA ATAATCCCAG
    GCAATGGCGC AGCAAGTACG GAGATCGGCC ACCGTCTTCT TCACCTCCGG
    TCGCCGTCGC CATTGTCGAT TCCGCCTCCT CCGATCTTGG AGTCTTTTGA
    GCTGTCGCCG TCAACCCGAA GGAGTTTGCC GCCGCCGGAC CTGTTCGCGA
    GCTATTACGG ATGACCAAGC TTCGCCAACC TTTTCTAGAA TCTCGCTTTC
    CCTCCGGTGA AGCGGCCGCA TGAGGACGAC CTCGGCGCCG GTGACGTGCT
    GACCTTCAGG TTCCACTCCC TCGCCGTCTT GAAATTATTC GACCGCATCC
    GCGAGTACCG TCTGCACGAT TACCGGTACC AGGCAACGCG AGGCTGGTAC
    AGCTCCGGGA CGGCGCCGGA GGATGCTCTT CTTCCCTGTG CGGTTGCTCG
    ACCACCGAGG ATGTATGGGT GCGTGATCGG GGTGCAGCGC GGTCGGACGG
    TGGAGGTCGT CGACACCTCC GACATCTTGC TCGACACCGA CCCCGGAACC
    CTCGACCGCG ACTTGTTGAA GAAGAAGCTC GAGACCTACA AGAAGGCGTT
    CCCTGGCTTG GCCATTCTTG GGTGGTACTC CATTGACACT CATGTGACGA
    ACACCGATAT GGAAACCAAC CAGGCTTTGA TGGATGCTAG TGGAACAACC
    TTTTATCTTC TATTCAATCC TGCAATGAAC CTTTCCCTGA AGGATCTCCC
    AGTGACTATT TATGAAAAAG TGCACTCTAC CAATAGGAGT CCCACTCCGT
    TAATCTTTGT CCAAGGCAAA TATAAAACTG AGACTGTAGA GGCAGAGAGG
    ATATCTTTAG ACCATACGTG TCCTGTAGTT TCTGATGTTA GTGTGCCACC
    TCTTGTTGGA AAAGGGCAAC ATGCAAATAT TATGCAGACT TCTGGATTTA
    AGCTGATGCT GTTTGAAATT CCTTCTGGTT TCGCGATGTT TGAAGTTTCA
    CAGGAACTGA TTGCACGCCC TAAGGACATA TGGGCACGAT TTGCTTATCA
    GGATGACATT ACAAATGTTA TTGTTACCCT GGGTTCTATT CAGATCCATA
    ACAAATCTGT TGCTAGGGAT ATTATTGTTG GTCCTGGTGA CGAACTGAAA
    GAATTTATCC TAAGCTTTTG CACTCACAAC TACTTAATTG TTCAAGATGT
    AGAGCTTAAA GATGTTATCG AGAAGAAACT TAATATCTAT TGTTACTGTA
    ATCCAACTGT TGTCGGTGAA TTGACATGGG GACTGAACTA TGTCCTACAT
    AAGTTGTTAC CTCAAGAGCA AAGTTTAACT CATGAGCCTT ATCTTCCACT
    AAGCAAGGCA ATGTCTAAGC AGATAAAAGA ATATGGGTTC AAAATCTCGC
    CACGAGAGAT TGACAGAGAG TTCCTAAGAG CTATGAGTTT TTTAAATTAT
    TTGGGGTATA TGTCAGAGCG TTATTCACTG CTGCTAGATC ATTTGTTTGG
    ACAATATCGT AAGAATAATA TGTCCGACAT TGAATTTGCT AAATCAATTG
    CATCTCATCT TCATTCCTCT GAGGGAATTG TACCAAGAGA TGAGAGATAC
    ACTAGAGCAG AGATTATGGA GTTCATTGAC TTCATAATTG CAGCTCCTGA
    AAACAGAAGC CGGACGCTAT CGTTCCTGCG GCGCATCGAG GCAGCTTCTA
    TTGATGATTC TCCTCCACCG CCTTCACTGT CAGGAGGGAT GGGTGTTTCG
    TTGTTGAAGC GTCTTCGTTT GGATTGGATA ACTGTTTGTT GTCTAGGATG
    TGCAGTTGCT CTTTACCCTT TCTACCGCAG AGTATGAATG ACTTTGTTAT
    AAAATTCACT ATGTTTTGAG GACAAATACA TATTCTCTGA CCTGCTTGAT
    TAGTACC

    Gene models with high sequence identity

    1. AT4G26430.1 [+] show detail - COP9 signalosome subunit 6B
      E-value: 6e-36; Score: 149.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIGNALOSOME SUBUNIT 6 2.7e-37
    HMMPanther EIF3F-RELATED 2.7e-37
    HMMPfam Mov34/MPN/PAD-1 0.00000012

    See the detailed result >

    AT4G26430.1

    Model type
    Protein coding
    Short Description
    COP9 signalosome subunit 6B
    Curator Summary
    one of two genes encoding subunit 6 of COP9 signalosome complex
    Computational Description
    COP9 signalosome subunit 6B (CSN6B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6A (TAIR:AT5G56280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR