K20445

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20445

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20445

Determination of introduced cDNA(s)

  • J013065F07 - Rice Full-length cDNAs - Original: J013065F07

    full reading [+] show sequence

    Nucleotide sequence: J013065F07 - full reading 
    GCTGCCTCGA TTGATTGATT GATTCCTTGG AGAAGAAGAA GGAGGAGGAG 
    GAGATCGAGC AGCCGCTGAC GCTCGTCGTC TACCTCCCGA TCTGATCCGA 
    GGAGCGAAGC GAACAGGGGC AAGATGCATT CGACGAATCT GCTGCTGGAG 
    GAGCCCATCA GGATGGCATC CATCCTGGAG CCATCCAAGC CGAGCTTTTT 
    CCCGGCGATG ACCAAGATCG TGGGGACGCT GGGTCCCAAG TCGCGCGCCG 
    TCGACACCAT CTCCTCCTGC CTCAAGGCCG GCATGTCGGT TGCCAGGTTC 
    GATTTCTCGT GGGGAGACGC TGAGTACCAC CAGGAAACCC TCGAAAACCT 
    CAAGCTCGCC ATCAAGTCCA CCAAGAAGCT CTGTGCTGTC ATGCTCGACA 
    CTGTCGGCCC GGAGTTGCAG GTGGTGAACA AGAGTGAGGC TGCAATCTCC 
    CTTGAAGCGA ATGGCACTGT TGTTCTCACC CCTGACCAGG GGCAGGAGGC 
    CTCCTCCGAA TTGCTGCCCA TCAACTTCTC CGGGCTTGCT AAGGCTCTGA 
    AACCAGGTGC TACAATTTTT GTGGGGCAAT ACTTGTTCAC TGGCGGTGAG 
    ACTACTTCAG TTTGGTTAGA GGTTTCTGAA GTTAAAGGAG ATGATGTGGT 
    TTGTGTGATA AAAAATTCGG CTACTCTGGC TGGTTCACTG TTCACCCTGC 
    ATTGTTCTCA GATTCATATC GACTTACCTA CACTGTCTGA TGAGGACAAG 
    GAGGTTATCA GAAGATGGGG AGCTCCAAAC AAGATTGACT TCCTCTCTCT 
    GTCTTATACA AGACACGCGG AAGATGTGCG ACAGGCACGT GAGTTCCTCT 
    CAAAGTTAGG CGACCTTAGC CAAACTCAGA TTTTTGCCAA AATTGAGAAT 
    GTTGAGGGTT TGAATCATTT TGATGAAATC CTGCAAGAGG CGGATGGTAT 
    CATTCTGTCA AGAGGAAACC TTGGAATTGA TCTTCCACCT GAAAAGGTGT 
    TTTTGTTTCA AAAGTCTGCT CTGCACAAGT GCAACATGGC TGGAAAGCCT 
    GCTGTTGTTA CTCGTGTTGT GGACAGTATG ACTGACAACC TCAGGCCTAC 
    TCGTGCGGAG GCTACTGATG TGGCAAATGC TGTACTTGAC GGGAGTGATG 
    CCATTCTCCT TGGTGCTGAG ACTCTCCGTG GTCTGTACCC AGTTGAGACT 
    ATCTCAATTG TGGGCAAAAT TTGCGCTGAG GCAGAGAAGG TATTCAACCA 
    AGATTTATAC TTCAAGCGGA CTGTGAAATA TGTTGGGGAG CCCATGACCC 
    ACTTGGAGTC TATCGCTTCT TCTGCGGTGC GAGCTGCTAT CAAAGTGAAG 
    GCTTCTGTCA TTATTTGCTT CACATCATCT GGACGCGCTG CAAGACTAAT 
    TGCCAAGTAC AGGCCCACCA TGCCTGTTCT ATCTGTTGTC ATTCCTCGTC 
    TGAAAACAAA CCAACTGAGG TGGAGTTTCA CTGGCGCATT TGAAGCAAGA 
    CAATCACTCA TAGTTAGAGG TCTCTTTCCG ATGCTTGCTG ATCCTCGCCA 
    TCCAGCTGAA TCGACCAGCG CTACCAATGA GTCAGTTTTG AAGGTTGCTC 
    TTGACCATGG CAAAGCTTCC GGTGTGATCA AGTCGCATGA TCGCGTTGTT 
    GTCTGCCAGA AAGTGGGTGA TTCCTCGGTT GAGAAGATCA TTGAGCTGGA 
    CGATTAGACG ACCAGCTTGT GCTTGTTGAT GATACTACGG CAAGTCATGG 
    TTTGCCAGAT TTTGACTAGG CCAAAAACGA TGCTTCTTGG CTATATGTAT 
    AATTCCTATA TAGGCTTTCC AATGAGCAGT TTTTCCTATG GTGTAATCAT 
    AGGATTTGCC TTACTATTTG AAACAACTAC GTTTTAGTTA TGTAAGTTAT 
    CAGATTTCAA TGCATCATAT CACTTCGATG GGC

    Gene models with high sequence identity

    1. AT3G52990.1 [+] show detail - Pyruvate kinase family protein
      E-value: 0; Score: 922.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pyruvate kinase 1.5e-95
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 4.3e-70
    superfamily Pyruvate kinase, C-terminal-like 6e-26
    superfamily Pyruvate kinase, beta-barrel-like 0.000000018
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 8e-66
    Gene3D Pyruvate kinase, alpha/beta 1.3e-17
    HMMPanther Pyruvate kinase 1.8e-194
    HMMPfam Pyruvate kinase, barrel 6.6e-92
    HMMPfam Pyruvate kinase, alpha/beta 1.3e-21
    FPrintScan Pyruvate kinase, barrel 1.8e-44
    FPrintScan Pyruvate kinase, barrel 1.8e-44
    FPrintScan Pyruvate kinase, barrel 1.8e-44
    FPrintScan Pyruvate kinase, barrel 1.8e-44
    FPrintScan Pyruvate kinase, barrel 1.8e-44
    FPrintScan Pyruvate kinase, barrel 1.8e-44

    See the detailed result >

    AT3G52990.1

    Model type
    Protein coding
    Short Description
    Pyruvate kinase family protein
    Computational Description
    Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT2G36580.1); Has 9836 Blast hits to 9793 proteins in 2683 species: Archae - 167; Bacteria - 5933; Metazoa - 534; Fungi - 219; Plants - 549; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR