K20502

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20502

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20502

Determination of introduced cDNA(s)

  • J033080C05 - Rice Full-length cDNAs - Original: J033080C05

    full reading [+] show sequence

    Nucleotide sequence: J033080C05 - full reading 
    GAGCAAAAAG CAAGCAACCT CACCGAGGAG GGGAATGGAA TGGAGCTGAG 
    CCTTCTCCCC GCCCCACGCG TGTAGCCGCC GCCGCCGGCG AGCAGGTTTG 
    GAGTGGGGGC GACGCGGCCG TGGAGAGCAG GTCTCGTGTC CGGATCGAAT 
    CGAAGGGCGT TTCTAGTGTC AAAAAGAGAG GAGGGATGGC GATGACGGGG 
    TACAAGTACC AAGCTCAGGA GTTGATGAGA GACTACTTGC TGGCTGATCC 
    ACTGGTTCCG TACACCTCGG TGCTCGTAGG CATTGCCCTG TGCAAGATGG 
    CATATGATCT CACAAGGGTA CTGAGCTCAT TTTACTTCAA GGGATATTCT 
    TCACTGACAA AGATACAACG TGTTGAATGG AACAACAGGG GTATGTCCAG 
    TGCACATGCG ATCTTTATCA CAGCTATATC ATTATATCTT GTCATGTCTA 
    CAGATCTTTT CTCTGATCGC CTTAAGGGGC CTATCACATT CCGCAATTCA 
    ATCATCTCCA CTTTTGCATT AGGGGTTTCT GTGGGCTACT TCATCGCTGA 
    CCTTGCAATG ATCTTCTGGT TGTATCCTTC CCTTGGTGGA ATGGAATACA 
    TCGTCCATCA TACTCTTTCT CTAGTTGCAA TAGCTTACAC AATGTTGTCA 
    GGGGAGGGTC AGTTCTACAC ATACATGGTT CTTATTTCAG AAACAACCAC 
    CCCTGAAATT AACTTGAGAT GGTTTCTTGA CACAGCTGGA CTGAAAAAGT 
    CAAGTGCTTA CTTGGTTAAT GGTATTCTGA TGTTCGTTGC ATGGCTGGTT 
    GCAAGGATAC TTCTGTTCAT TTACGTATTC TATCACATCT ATTTGCACTA 
    CAGTCAGGTA ATGCAGATGC ATGCTTTTGG GTACTACTTG ACATTTATTG 
    TGCCATCGGT GCTCTTTGTC ATGAACACAA TGTGGTTTAT GAAGATCTTG 
    AAAGGCGTGA AGAAAACATT GGGGAAGTGG TCATGATCGA TCCAGGAATG 
    CAGATCCTAG AACCGCCAAC AAGAGTTGGT ATTCCAGCGA TCATCCGTAT 
    GATCTTGATG TGTAAAGTTA TGGACATATA TCAGGTTAAC TAGGTAAAGC 
    GAATATGTAA AGTGCTAGTA GCAAAAACAA GTTTAGATTA GGCCAAATTG 
    CCGCTATTTT CAGCAAGCTG GAATTTCCTA GCCTGTTTGG CACGGTACTG 
    AAGTTCCCAG CACGCTGTTT CTCCCCTCCC GCATCGTGTG TATATCTGAA 
    GAAATTTCTG TGGATCAGTT GCCCAACAGT ACAACCTCAA ATGCTATAGT 
    ATTTGTGACA ATTACAGTAT TTACCTGTTC TCGCTCAACT CCTGTAGGAA 
    AAGACATGTA AAAACGGTAG CATATCTCGT TGCTGATGTT TGAATTCGCC 
    AAAACACGTC CTATGAAAAT TAATCAT

    Gene models with high sequence identity

    1. AT1G31300.2 [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
      E-value: 1e-102; Score: 370.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan TRAM/LAG1/CLN8 homology domain 34.36
    HMMPfam TRAM/LAG1/CLN8 homology domain 1.1e-33
    HMMSmart TRAM/LAG1/CLN8 homology domain 6.9e-41
    HMMPanther CT120 PROTEIN 0.0000012

    See the detailed result >

    AT1G31300.2

    Model type
    Protein coding
    Short Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    Computational Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT4G19645.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR