K20507

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20507

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20507

Determination of introduced cDNA(s)

  • J013123G12 - Rice Full-length cDNAs - Original: J013123G12

    full reading [+] show sequence

    Nucleotide sequence: J013123G12 - full reading 
    TGGCGAGTCC TCCTCCTCTT CTCGTCGCCG TGCTACTCTC GCTTTCTCTC 
    TCTCTCTCTC TCACTTGTTC CCCAAGGCGA GAAGCAGCCG CCGCCGGCGA 
    GCGTCGCGGG GGAGGGGAGG GAAGGGAGGG AGGAGCGGTG GATCCGGGCT 
    TGATTGGATT GGGTCGGATT CGATTTTGGA TCAACCCCGG AGGGCGGGAG 
    CGGTTGCTAC AGATGCGTTG AGCTTTGGTT AATCTATCCG GCGAGAGATA 
    ATGGGCGAGC TTGCTGATCT CGTTGTCGTG CCGTCGCAGC CGCCGCTCGC 
    CGGTGGCCGG CGGGACAGGC TGGCGGCGCT GCTGGAGCTC GCGGCGGCGG 
    ATGATGTTGA TGGGCTCAGG GGGGCGCTCG CGGAGGGAGG CGAGGAGGCG 
    GCGGAGTTGG CTGATGGGGT CGGGCTGTGG TATGGTCGGA GCAAGGCGTA 
    CGAGGCGCGC ACGCCGCTGA TGGTGGCGGC GACGTACGGC AGCGCCGGGG 
    TGGTCTCGCT GCTGGTGGGC CTCGGCGGTT GCGTCGACGT CAACCGTCGC 
    CCTGGAGCCG ACGGCGCCAC CGCGCTCCAC TGCGCCGCCT CCGGTGGCTC 
    GCGCAACGCC GTCGCTGTTG TCAAGCTGCT TTTGGCCGCT GGCGCCGATC 
    CGGCCACCCC CGATTCCGCC GGCCGCTTCC CCGCCGACGT CATCCTAGCT 
    CCTCCGGCTT CGCCAGATGC CCTTGGCGAT CTCGAGGTGC TCCTCGGCCG 
    CCGCCGAGCA CTCGCCGTGG CGACCTCGGT GGCTTCAGGT TCGTCATCCC 
    CTCCGCTCTC GTCCTCACCA GATGAGGGCA ACAGGTCGCC CTCGTCGCGT 
    TCGTCGTCGC TGTCTCCCAT CACTGTGGAT CGTGGGAAGA AGGAGTATCC 
    GGTGGATCCA ACTCTGCCGG ACATCAAGAG CAGCGTGTAT GCTTCGGATG 
    AGTTCCGCAT GTTTGCGTTC AAGGTCCGGC CCTGCTCCCG TGCCTACTCA 
    CACGACTGGA CTGAGTGCCC GTTTGTGCAC CCCGGCGAGA ACGCCCGCCG 
    CCGTGATCCC CGCAAGCACC CATACACTGC TGTGCCTTGC CCCAACTTTC 
    GCCGGCCTGG TGGCTGCCCT AGCGGCGATA GCTGTGAGTT CTCGCATGGC 
    GTGTTTGAGA GCTGGCTACA CCCATCACAG TATCGCACAA GGCTCTGCAA 
    GGAGGGAGCA GCTTGCGCCC GTCGCATTTG CTTCTTTGCC CATGATGAGG 
    ATGAGCTCCG CCATGTGCCT CACAACAGTG GTGCCGGCCT GCTGTCTCCC 
    CGCGCTTCTT CATCCATTGA TATGACTGCT GCAGCTGCGC TCGGGCTTCT 
    TCCAGGTTCT CCTACCAGAC ACTTTGCACC GCCGCCTGTG TCACCATCTG 
    CTGGGAGCAA TGGAGGAGCT GCTGCTGCGC ATTGGCTCCA AGGCAGTAGG 
    CTGCGTTCTT CTTTCAATGC AAGGGATGCT GCTGTTGATG ACCTTGGCAT 
    GCTCCTCGAA TGGGAATCAC AATACCTTGG GGCACTCTGC CTGCCACCCA 
    GCAGCCGCCC CCAACCACGC CTTTCAGCTG GTCTGAGTAT CAGGCCAACA 
    ATTGCTCCAT CCAATCTTGA AGACATGTAT GCTTCAGACA TGGCAATGTC 
    TCCGAGGTTC CCTAATGACC AAGGTCACTC AGTCTACTCA CCAGCCCACA 
    AATCAGCCCT ACTCAACAAG CTTCATCAAC AGAAGGGCCT CTTATCACCT 
    GTTAACACCA ACAGAATGTA CTCCCCAAGG GCTCTTGATC CGTCATCTTT 
    GGCACATTCT CCATTTGGTG GCATGTCTCC CCGGTCCCCC CGTACCATGG 
    AACCTACATC ACCCCTAAGT GCTCGTGTAG GAGCCCCTGC CACACAGCGG 
    CCTTCTGTTG GTTCACCACG GAATTCCAGT GCTTGGGGCA CCGTGGGGTC 
    CCCGATGGGT AAGGTTGACT GGGGTGTCGA TAGCGAGGAG CTAGTCCGCT 
    TGAGACGCCC TGCACAACCA GGGTTTGGAG AAGATGAGAC AGATGTATCA 
    TGGGTGCAGT CACTGGTAAG CAATGCTGAG CTTAATGGCA AGAGGGGCGA 
    AGTACAAGGC ATGCCTGGTA CTTCTGCATT GATGAACAGG CCTGACCTGA 
    ACAATCAGGG TGACTTGTTG GACCAGACGG TGATCGGTGC TTGGCTTGAG 
    CAGATGCACC TGGATCAGAA GTGATTTCCA AGGGAAGCCA TGAAGTCCCA 
    AAGTGGATGA AGCCTTTATT TTGCCAAGGT TATTTACCAA AGAATAGTTG 
    TTGGTCCTAG TAAATAATAA TTTATTCTTT TTAATTCTTG AAATTTTTGG 
    TGGGCAAAGT CAGAGATGGT GGTCAAGTTC AACAAAACAT TTGGTCACAG 
    ATTGGTAGCT GAAATCAGTT CCAGAGATTG GTAAACAACC TCATTACTTG 
    GGGTCCTAAC TAGTATTCTT TTGATTAGCT CAGATGAGTC TTTATTTTAG 
    TGGGTTAAAA TTCATATGTT CCCCATGGTT ATTATGTCCA TGATCTCTTC 
    CTAACAAAAG AGAGATTATA ATTGTCCATT TTTCATTTAT CAATGAATGA 
    TTTTGTTAAA ACAATGTAAG TTACATTCTT AATTTTTTCT CTGTTCAATG 
    GAATTACCTT CCTTGGTTAG TCCTCC

    Gene models with high sequence identity

    1. AT2G41900.1 [+] show detail - CCCH-type zinc finger protein with ARM repeat domain
      E-value: 1e-108; Score: 391.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, C2H2-type 0
    superfamily Ankyrin repeat-containing domain 1.3e-17
    superfamily CCCH zinc finger 0.000008
    superfamily CCCH zinc finger 0.0016
    Gene3D Ankyrin repeat-containing domain 0.000000000064
    HMMPanther UNCHARACTERIZED 0.0000000097
    HMMPfam Ankyrin repeat 0.000076
    HMMPfam Ankyrin repeat 0.000006
    HMMPfam Zinc finger, CCCH-type 0.000012
    HMMSmart Ankyrin repeat 0.66
    HMMSmart Ankyrin repeat 0.0044
    HMMSmart Zinc finger, CCCH-type 0.00056
    HMMSmart Zinc finger, CCCH-type 21
    ProfileScan Ankyrin repeat 9.217
    ProfileScan Ankyrin repeat 12.529
    ProfileScan Zinc finger, CCCH-type 13.995
    ProfileScan Ankyrin repeat-containing domain 18.908

    See the detailed result >

    AT2G41900.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger protein with ARM repeat domain
    Computational Description
    CCCH-type zinc finger protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger protein with ARM repeat domain (TAIR:AT5G12850.1); Has 5399 Blast hits to 3519 proteins in 384 species: Archae - 10; Bacteria - 312; Metazoa - 2497; Fungi - 280; Plants - 489; Viruses - 8; Other Eukaryotes - 1803 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR