K20509

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20509

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20509

Determination of introduced cDNA(s)

  • J013000J06 - Rice Full-length cDNAs - Original: J013000J06

    full reading [+] show sequence

    Nucleotide sequence: J013000J06 - full reading 
    GATAGATTAT TCCGTCCGTT CCAACAACCT CTCCGCCTCC TCGTCCCCGT 
    CCTCAACCTC ACCGCCTCCC CGCCGCAGTA GCAGAGTCGC CCGCCGCCGC 
    GCATCCGCAT GGCAGCTGCT CAAGGTAGCA GCGTTGTCCC ATCCTCTGCG 
    AAAGTTGACT TTTTAAAGCT CCAGAATGGC AGTGATATTC GTGGTGTTGC 
    TGTTGGTGGG GTCGAAGGCG AGCCCGTAAA TCTCACTGAG CCTGTTACTG 
    AAGCAATAGC TTCTGCATTT GCTGCATGGT TATTAAACAA GAAGAAAGCG 
    GATGGATGGA GACGTTTAAG AATTTCTGTT GGACATGATT CTCGAATTTC 
    TGCACATAAA TTGCAGGATG CAGTTACTCT TGGAATTACC ACTGCAGGGC 
    ATGATGTTTT ACAATTTGGA TTGGCTTCAA CACCAGCAAT GTTCAACAGT 
    ACACTTACAG AAGATGAGAT AAATCATTGC CCAGTTGATG GAGCCATAAT 
    GATAACAGCA AGTCATCTTC CATACAACCG GAATGGTCTC AAATTTTTTA 
    CAAGTGCCGG TGGTTTGAAT AAGGCTGATA TCAAAGATAT CTTGGAGCGC 
    GCTTCTAGAA TATATGAGGA CTCTTCTCAT GGTAGCACAC AAGAATTAGA 
    GCAAGCTTCG AAGGGAGAAG TGAGTAATGT CGATTACATG TCAATTTATG 
    CATCCGATCT TGTGAAAGCA GTTCGTAAAT CTGCTGGAAA CAAAGAAAAA 
    CCACTGGAGG GACTGCACAT AGTCGTGGAT GCAGGGAATG GAGCAGGTGG 
    CTTTTTTGTG GATAAGGTAC TCAAGCCGTT AGGCGCTATT ACTACTGGGA 
    GCCAATTCCT AGAGCCTGAT GGCATGTTTC CAAATCACAT TCCAAATCCT 
    GAGGACAAAA CTGCAATGAA AGCCATTACA CAAGCTGTGG CCGATAACAA 
    GGCAGACTTG GGCATCATAT TTGATACTGA TGTTGACAGG TCTGCTGCTG 
    TTGATTCAAG TGGTCGTGAG TTAAACCGTA ACAGATTGAT TGCTTTGATG 
    TCTGCCATAG TTCTTGAAGA GCACCCAGGC ACTACAATTG TGACAGATAG 
    CGTGACTTCT GATGGGCTGA CTACATTTAT TGAAAATAAA CTTGGAGGGA 
    AGCATCATCG TTTCAAGCGA GGGTACAAGA ATGTAATAGA TGAGGCTATT 
    CGTCTGAATA CTATTGGTGA GGAGTCACAT TTAGCTATGG AAACAAGTGG 
    CCATGGAGCA CTGAAAGAGA ATCACTGGCT CGATGATGGT GCATATCTTA 
    TGGTTAAACT TTTGAATAAG CTTGCTGCAG CTAGAATATT GAATCCAAAC 
    GTTGGTAGTA AAGTTTTGAC TGATTTGGTC GAGGGCCTTG AGGAGGCTTC 
    TGTGACAGTG GAGATAAGAT TGAAGATTGA TCAGAATCAT GCAGATTTGA 
    AAGGGGGGTC CTTCCGTGAT TACGGAGAAG CTGTCTTGAA ACATTTGGAG 
    AATGCAATCA GTAAAGATGA ATATCTGTGC AAAGCACCGA AGAACTATGA 
    AGGCGTAAGA GTTTCAGGAT ATGGTGGCTG GTTCTTATTG CGGTTATCCC 
    TCCATGACCC AGTTCTTCCC CTTAACATCG AGGCGCCGAG CAAGGATGAT 
    GCCATTAAGC TTGGGCTTGC AGTGCTTACT GCCGTAAGTG AATTTCCAGC 
    ATTGGACATA ACGGCATTGA ACAAGTTTTT GCAGCAGTGA TGGAAGTATT 
    GCGGCGGCGA CGATAATCTG CAGCCATCAC ATGCCTTTGT TGAGCTGGGA 
    TGAGAGAAAC GCACCACAGT ACTATACATA GACGTACTTG CATTCAGGCT 
    TACACATAAT ATTACATGGT TTTGACTTTT CGGCTTTACT TGGTCTTTGT 
    TTGGTATGGA AATGTCAAAC AAGGAAGACT AATTTTCGTG TTTTAAAGAA 
    AATATACAAA GTAGTTGTCA GGAATCTTAT ATACCATCGT CAATGTGTTT 
    TCGGATTGCT T

    Gene models with high sequence identity

    1. AT5G17530.3 [+] show detail - phosphoglucosamine mutase family protein
      E-value: 0; Score: 775.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.2e-23
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 6.7e-19
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 2.1e-17
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 5.1e-31
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.6e-26
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 2.1e-16
    HMMPanther PHOSPHOGLUCOMUTASE 2.4e-216
    HMMPanther PHOSPHOHEXOMUTASE FAMILY MEMBER 2.4e-216
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 7.7e-19
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 7.7e-19
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 7.7e-19
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 7.7e-19
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain I 1.7e-26
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain II 2e-22
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain III 0.000000000011

    See the detailed result >

    AT5G17530.3

    Model type
    Protein coding
    Short Description
    phosphoglucosamine mutase family protein
    Computational Description
    phosphoglucosamine mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, putative / glucose phosphomutase, putative (TAIR:AT1G70820.1).
    Link
    InterPro Scan - TAIR