K20510

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20510

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20510

Determination of introduced cDNA(s)

  • J013071N20 - Rice Full-length cDNAs - Original: J013071N20

    full reading [+] show sequence

    Nucleotide sequence: J013071N20 - full reading 
    GTTCCCCTTC TATCCACCCA CACCAGCAAG CCGCTCAGGC GCGCTCTCCG 
    CTCCACCGCC ATGGCGTCCA TCACCCTCCT CTCCCTCGCT CCCGCGGCCA 
    CATTGCTCCA CCTCCCGGCC TCCACTTCGC TCTCCACCTC CTTCGTCGCC 
    GCTCCAGGCC CCATCTCCGG CCGCCGGTCC GTCGTCCTCC GCGCCCGCCC 
    GCGCCGCTGC GTCACGGTCG TGTGCAGCGC CGCGGCGGCC GAGGCCGCGG 
    AGGCGGAGCC CGCGGAGAAG TTCCGGCTCG ACAACCTGGG CCCGCAGAAG 
    GGGTCGCGGC GGCGCCCGAA GCGGAAGGGG CGCGGTATCG CGGCGGGGCA 
    GGGCGCGAGC TGCGGGTTCG GCATGCGTGG ACAGAAGTCG CGCTCGGGGC 
    CAGGCGTCCG GCGCGGGTTC GAGGGAGGGT AGATGCCGCT CTACCGCCGC 
    ATCCCCAAGC TGCGCGGCAT TGCTGGAGGA ATGCATATTG GCTTGCCGAA 
    GTATGTGCCG TTCAATTTGA GAGACTTGGC GCGTGGCGGG TTCAAGGATG 
    GTGACGAGAT ATCATTGGAA TCCTTGAAAT CGAGGGGTTT GATTAATCCG 
    TCTGGCAGGG AGAGAAAGCT TCCTCTGAAG ATTTTAGGAG ATGGTGATGT 
    ATCAGTCAAG TTGAATATCA AGGCTGGGGC ATTCTCTGCT TCAGCCAAGG 
    AGAAGCTCGA GGCAGCTGGT TGTACTTTAA GTCTGGTACC AAAGCGGAAG 
    AAATGGCTAC CACAATCTTA TCTGAAGAAC CAAGCTCGTG CAGAAGAATA 
    CTTTAGCAAG AAAAATGGTG GTGCTGGTGA ATCTGATGAA GCATCTGCAT 
    AGAATTCATA TACACTGTAC TTCTCCTTTA CCCTTTTCTT TAACATATAC 
    TTATTTCTCT TACCTTGTTC CAAAAGTTCC ACGTTCAACG AATTTTGAAT 
    CCGTGCGATA TGCAAGC

    Gene models with high sequence identity

    1. AT3G25920.1 [+] show detail - ribosomal protein L15
      E-value: 4e-70; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L18e/L15 1.4e-12
    HMMPanther 50S RIBOSOMAL PROTEIN L15 1.1e-29
    HMMPanther Ribosomal protein L15, bacterial-type 1.1e-29
    HMMPanther 50S RIBOSOMAL PROTEIN L15 3.8e-69
    HMMPanther Ribosomal protein L15, bacterial-type 3.8e-69
    PatternScan Ribosomal protein L15, conserved site 0
    Gene3D no description 6.9e-07
    superfamily Ribosomal protein L18e/L15 3.3e-13

    See the detailed result >

    AT3G25920.1

    Model type
    Protein coding
    Short Description
    ribosomal protein L15
    Curator Summary
    encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex
    Computational Description
    ribosomal protein L15 (RPL15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G64670.1); Has 7744 Blast hits to 7744 proteins in 2658 species: Archae - 15; Bacteria - 5386; Metazoa - 72; Fungi - 86; Plants - 90; Viruses - 0; Other Eukaryotes - 2095 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR