K20511

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20511

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20511

Determination of introduced cDNA(s)

  • J033133G01 - Rice Full-length cDNAs - Original: J033133G01

    full reading [+] show sequence

    Nucleotide sequence: J033133G01 - full reading 
    GGGATAAGCC CCCCGCGCCC GCACACAACC GCACCGCCAT TTCGCGGTTC 
    CGCCATGGCC ACCGCCGCGG CGCTCGCGCT CCACACGCAG TTCCGGCCGC 
    CGCGCTCGCC TCGCCGTCTC CGGCAGCATC TAGCCTTACC CTCAGGAGTC 
    CTCATCCGAT CCCCCGTCCG CGCCTCGGCT GCGTCGGCGT CGGCGTCGGC 
    GCCGGCGCAG CGGGAGGCCG CCGCCGCGGG AGTCCCGTGG GGCTGCGAGA 
    TCGAGTCCCT GGAGAGCGCC GTGTCGCTGG AGAGGTGGCT CACCGATTCG 
    GGGCTCCCCG AGCAGAGGTT GGGGATACAG CGGGTGGACG TCGGTGAGCG 
    CGGCCTCGTC GCGCTGAAGA ACATCCGCAA GGGGGAGAAG CTGCTCTTCG 
    TGCCTCCCTC CCTCGTCATT ACAGCTGACT CAGAATGGGG CTGCCCTGAG 
    GTGGGGAATG TGTTGAAGAG AAATTCTGTG CCGGATTGGC CGCTTATTGC 
    TACCTACCTT ATAAGCGAAG CTAGTTTAGA GAGTTCGTCG AGGTGGAGCA 
    GCTACATAGC GGCGTTGCCA AGGCAGCCTT ACTCTCTGTT GTACTGGACT 
    AGGCCTGAGC TTGATGCATA CTTGGTGGCT TCGCCGATCA GGGAACGCGC 
    AATTCAGAGG ATCACTGATG TGGTCGGAAC ATACAATGAT CTCCGTGACA 
    GAATATTTTC TAAGCATTCA GATTTGTTCC CTGAGGAGGT TTACAACTTA 
    GAGACGTTTA GATGGTCCTT CGGCATCCTC TTCTCACGCC TGGTTCGATT 
    GCCATCAATG GATGGAAGGG TTGCACTAGT TCCTTGGGCA GATATGCTTA 
    ACCATAGTCC TGAGGTGGAA ACATTCTTGG ATTATGATAA ATCCTCAGGG 
    GGAATAGTTT TCACTACCGA TCGTTCATAT CAACCAGGTG AGCAGGTGTT 
    TATATCCTAT GGCAAGAAAT CCAGTGGCGA GCTATTGCTT TCATATGGTT 
    TTGTTCCAAA AGAGGGAACA AACCCAAATG ATTCAGTTGA ATTGCTGGTG 
    TCTCTTAATA AGTCTGATAA GTGCTACAAA GAGAAGCTAC AAGCACTAAA 
    AAGAAATGGA TTGTCAGAGT TTGAAAGTTT CCCTTTACGC GTCACAGGAT 
    GGCCAGTTGA GTTGATGGCT TATGCCTTTC TTGTGGTCAG CCCTCCCGAG 
    ATGAGCCAAC GTTTTGAAGA GATGGCTGTC GCTGCATCAA ATAAAAGTCC 
    ATCCAAGCCT GGACTTAATT ATCCTGAACT GGAGGAACAA GCTCTTCAGT 
    TTATCTTGGA CTGTTGTGAG TCTAACATAG CAAAATACAC AAAGTTCCTA 
    GAGGGTAGCA GTGGGTCTCT GCAACTTTCA ACCAATTCAA AGCAAGCCAA 
    CCGGACGTTA CTGCTAAAAC AACTAGCAAG AGATCTTTGC ATTAGTGAAC 
    GGAGAATCCT GTATCGTACA CAATATATAT TGCGTAGGAG ACTGAGGGAC 
    ATGAGAGGTG GTGAACTTAA AGCTCTGTCA TTGTTCAATG GGCTCAGAAA 
    GCTCTTCAAA TAAAAGGATG GATTTGTTTT TCAATGTTAG CTGAAGATTT 
    CGAGGACAAT GTTTAATCTC TAGTATCTTG CTTCTTCCTT TCAGGTTGTC 
    TTTGTTGCTG ATGAAGCTCA GACTGTTGAA GAAAAGGAAA TTGACAAATC 
    AGATTACAAT CTCAGCCGAC AAGCAACTGA TGCTAGAAGA CTAGAAGTGG 
    TCACAGCTCA ATAGAAGACA CTAGTTGTAA CTTGCGATTG AACAGTCCAT 
    ATCTTGGTTT AAATCTACTA TAGCACCATG CAACAATGTA CCAGTGGAGT 
    CATCTCGTGT ATATTTTGTT TCAGGGGTTT CCCCTCGATA TCTATAGCAT 
    AATATCCCTT CTATTTCTGC TGTTTTCACC CC

    Gene models with high sequence identity

    1. AT3G07670.1 [+] show detail - Rubisco methyltransferase family protein
      E-value: 0; Score: 643.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Rubisco methyltransferase 4.3e-186
    HMMPfam Rubis-subs-bind 2.2e-22
    HMMPfam SET domain 0.00000000000038
    HMMPanther UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4.5e-73
    superfamily SET domain 1.6e-43
    superfamily RuBisCo LSMT C-terminal, substrate-binding do 3.1e-31
    HMMSmart SET domain 0.0000000000021
    Gene3D no description 3.3e-54

    See the detailed result >

    AT3G07670.1

    Model type
    Protein coding
    Short Description
    Rubisco methyltransferase family protein
    Computational Description
    Rubisco methyltransferase family protein; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT5G14260.2); Has 1290 Blast hits to 1288 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 357; Plants - 465; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR