K20512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20512

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20512

Determination of introduced cDNA(s)

  • J013148M09 - Rice Full-length cDNAs - Original: J013148M09

    full reading [+] show sequence

    Nucleotide sequence: J013148M09 - full reading 
    GGTTCCCTTG CTACACTGAC ACACATCCTC GATGGCCACT TATCTCCAAT 
    CAGCAGGCCT CACCGCCGCC ACTGCCAGCA CCAGCCGCCT CCTCCGGCCA 
    ACACCACGGA GGCTGCTCCT CCTCGTGGCG GCGTGCTCCA CTGGCGGACG 
    GAGATCAGCC TGCCTCTCCG TCGGCCTCGC AGCCGCCGCC GCCACCATCT 
    TCCAGCATCA TCCCGCCTGC GCCGCCACCG ACGACGAGCC GGCAAACAAT 
    GGGTGGTGGC TCACCGAGTT CCCTTTGCCG GTGCCAAAGA TTGTCAACAA 
    GGAGCTGAAC AATGGCGAGA CGGGGAGCCG GACGTTCGTG AGGAACGGCA 
    TCTACATAGC CGACATCGGG CCGAGCTACG CGGCGCACGC GTACAGGCTG 
    CGGAGCACGG CGTTCGACCT GCTGGCGCTG GAGGACCTGC TGGGCAACAA 
    CGCCGACAGG GCCAACTACG TCACCAAGTA CCTCCGCCTC AAGTCCACCT 
    TCATGTACTT CGACTTCGAC AAGCTCATCT CCGCCGCCTC CGACGACCAG 
    CGCCCCCCGC TGCTCGACCT CGCCACCCGC CTCTTCGACA GCTTCGAGCG 
    CCTCCAGAAG GCCTGCGGCA CCAAGGACGA CACCCAGATC GGCTCCTCCT 
    ATGCCGACAC CAAGATCATC CTCCAGGAGG TCATGGCAAA GATGGCCTAG 
    TGTTTCTGTT GGTGTACTAG CTAGTACTGT ATTTCTCTCA CTTTACTTGT 
    CATACATACA TATATATATA TATATATATA TCCTCCTCAT C

    Gene models with high sequence identity

    1. AT3G01440.1 [+] show detail - PsbQ-like 1
      E-value: 2e-39; Score: 159.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Oxygen-evolving enhancer protein 3, 4.4e-28
    ProfileScan Coagulation factor 5/8 type, C-terminal 8.502
    HMMPfam Photosystem II oxygen evolving complex protein PsbQ 2.2e-63
    Gene3D no description 2.7e-30

    See the detailed result >

    AT3G01440.1

    Model type
    Protein coding
    Short Description
    PsbQ-like 1
    Curator Summary
    Encodes a subunit of the NAD(P)H complex located in the chloroplast thylakoid lumen.
    Computational Description
    PsbQ-like 1 (PQL1); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthesis, light reaction, photosynthetic electron transport chain; LOCATED IN: in 7 components; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.1); Has 165 Blast hits to 165 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR