K20514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20514

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20514

Determination of introduced cDNA(s)

  • J033120N14 - Rice Full-length cDNAs - Original: J033120N14

    full reading [+] show sequence

    Nucleotide sequence: J033120N14 - full reading 
    GGACGCGCCG CCGCCGCCGC TCGCCGCCGC ACCCTCACGC GCAGAGGAGG 
    AGCCCCCCCG CCGGAGCACC TCCACCTGTT TACTCTGAGT GACATGTCCC 
    CCTCGCCGCT GCTCGCCCGG CCGCCGGCGC CGTCGAGCCC GAGCACGTAC 
    CCGTCCCTCC CGCCTCGCCG GTGCGCCCCG GCTGTAGCTT CCGCGGCGCT 
    CCGCGTGGCT CCAGCCACCG CCTCCCGAGC CCCATTCTCC AGGCTGGTGA 
    CCAAGCGGAA TTTCGCTGCG TCTGATATTA GAGAAGACTA CTCCACTCCG 
    ATTGACGTCG TTGCCGATGT GAAAACCGAG AAGATTGTGG TGTTGGGAGG 
    GAGTGGATTC GTTGGCTCTG CTATCTGCAA AGCTGCTGTC TCTAAGGGTA 
    TTGAGGTTGT GAGCCTCAGC AGGTCAGGGA GACCATCTTA CTCTGATCCT 
    TGGGTTGATC AAGTTACTTG GCTAGCAGGA GATGTTTTCT ATGCAAGATG 
    GGATGAAGTG TTAGTTGGTG CCACTGCTGT TGTGTCTACC CTTGGAGGAT 
    TCGGTAATGA AGAACAGATG AAAAGGATAA ACGGTGAGGC AAATGTAACA 
    GCAGTAGATG CTGCAAAAGA ATTTGGAATC CCCAAATTCA TTTTAATTTC 
    TGTTCATGAT TACAATCTTC CATCCTTTCT TCTTAACTCG GGTTACTTCA 
    CTGGTAAGAG AAAGGCTGAA TCTGAAGTCC TCTCCAAATA CCCAACCTCA 
    GGTGTTGTAC TGAGGCCTGG TTTCATTTAT GGTAAAAGGA AAGTAGATGG 
    TTTTGAGATA CCACTCGATG TTGTAGGACA ACCATTAGAA AAGCTACTTT 
    CCTCTGTTGA AAATTTCACA AAACCGCTGA GTTCATTGCC AGCTTCTGAC 
    TTACTCCTTG CACCCCCAGT GAGTGTGGAT GATGTTGCCT ATGCTGTGAT 
    CAATGGAGTT ATAGATGACA GCTTCTTTGG TGTCTTCACG ATTGAGCAAA 
    TCAAGGAAGC CGCGGCGAAA GTAAGAGTGT AAACTGGGAG TCTTTATTGC 
    CAAGATGGAA GATTCAAACA TGCGGCTCCT TATTAAGAGA TATCCCTGTT 
    CTGTCTTGCA CTCTTGCAGT CTTAGATCAT ACATTCAATG GTTAAAGTTA 
    AATTCAAAAC TTTGTACAGT GTATGAATGT GGTGCTTGTT CCCTCCAAGC 
    AGAGAGGAAG AATGGGCTTT GATGGCAAAG GCCAATGCGC TTCATTTCTT 
    ACGAGATGCA TTGCCAAATG AATGTTCTTC TGGAGTACTT GTTT

    Gene models with high sequence identity

    1. AT1G32220.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 2e-102; Score: 369.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 6.3e-24
    HMMPanther UNCHARACTERIZED 5e-76
    HMMPanther NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT 5e-76
    Gene3D NAD(P)-binding domain 5e-20
    HMMPfam NAD-dependent epimerase/dehydratase 0.000000034

    See the detailed result >

    AT1G32220.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G10730.1); Has 840 Blast hits to 838 proteins in 330 species: Archae - 22; Bacteria - 387; Metazoa - 19; Fungi - 146; Plants - 128; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR