K20515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20515

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20515

Determination of introduced cDNA(s)

  • J013069K12 - Rice Full-length cDNAs - Original: J013069K12

    full reading [+] show sequence

    Nucleotide sequence: J013069K12 - full reading 
    GGTTTGTCTG CATGTTTTCA GAAAGAGGTG CTTGTGTCAG CATCATTTCT 
    GTTTCTTTGT CTGAAAGGCA GCAAAGGGCC TTCTCAACTT GTTTTCTATT 
    AGCTTTGTTC ATTGATTATG GTTTATGTGT TTCCTCATGA TTAACATCTG 
    CCTTTGGCTA GCCGATTTTA TGGATACTTG GTTGGAGAAC ATCTTTTTTC 
    TGTATTAAAT TTGTTTGGCT GCACTTTTCC AGAGTTCCAG TTTGCTATTC 
    AGGTTTAAAG AAAAGTTGAG GAATTGTTCC TTATTCTGCA AAGGTGGTGC 
    TTATAAGGAA CCACTCCTCC TACCTTTGTT GACGGGCTAA CACCAAATGG 
    CCCAGCTGTT GCACCATCAG GACTCCGCGT TTTATGGGAA GGAACTCCAT 
    GGGCGCCGAT GGAGCATTCT TCAGTTCTTT GGCTTCCGTC GCCGCCTGCG 
    ATCCACTAAG ATGATCTCTG ACAAGAAACA GAGTCAGGGA AAAGGCAGTG 
    GTGGAAGTAG ACGCCGAGGT TCATATGTTC CACTGAAAGA TGAAGACACT 
    AGTGTCATGG ACGATGACAA ACACACTGAG ACAACAAAGA AAAACAAGTC 
    TTCAAAAAAG AGTTCTGGTA AGGGAAGTTT GGGCTCCTTG ATTCTAAAAA 
    AGCTGTATGG AAAGGAAGGC CATAAAGAAA AGATGCTTCC TGTTGCACCG 
    AAGCTACTCC GTACCCTTTC AATACATTAC CTGGAAAGCA ATGAGTATGT 
    TCTTGATGGT GAATCTGCTT CCAATGGTGA TGGTTCTTCA CAAAGTATTA 
    TGCCAAATTC CACAGATACA AATATCCAAA ATGCTACATT CAACACCCAG 
    GATGGTTGCG ATAATGATAC AAGTTCTTCG CTTCTAAAGA GAGGTGACAT 
    TCATGTGAAA CAAAGGAGCC ACCGTAGCAT TTCAATGGAT GGAGTTCTTC 
    ATAAGGTCCC TTATGGACAT AAGGCATCTG AAGATGTAAT TAAAGAAGGA 
    CTTTCCCGGT CAGCCTCCGC CACATATGAC AGGGATGGTT TGAAATCTTA 
    TACTGTAACT GCTGCAAAAA GACCTGTAAA CCAAGGTTTT CGGCGTTCAC 
    GTTCCCTCAC TGAATCATTG GAGAAATATT CTCACTTGCT GGATTCTATT 
    TCAAGCAACC AGTCGAAGAG GACGCTGACA AGTTCAAAAT CTACTAGGGA 
    TCATTCTTTG GATGCGCCTG CTGTGATGAC TGGGTTGCAG AGTTTGGTTA 
    TGACTGCTGA AAATCTCGTG ATCCCAGAAC ATGCCTTGGC ACCATATGTT 
    CCAGAGAGAA TTATTGTGGA TGGAGATGTG GATGCTGCTA TGGATGAGAT 
    CTCTGGTCAT AAGGATGCTG ATGGCTCTGA AAATACTGTG TTAATCGAAG 
    AGTACATCGT TGACAAAAAG TGTGGTGTTT CTGTGTCAAC TGAAGCTAAT 
    ATATGTACTC CCCCTTTACT TTCAGAAGTG ATTGATATTT CACAGGGGCA 
    TGTAGCAACT TGTGATGACG ATCAGGTTCA CTCATCAACT GAAGATAATA 
    TGTGTACTGT TCATTCAAAA TCAGAAGAAA TTGATGTCCC AGAAGAACAT 
    GGAACAACTT GTGACGATGA CCATACTAAT TTGTCAACAG AAGCAGGTAT 
    GCATACTACT AAAGTTTCAG AAGACGGAAG GATTTCAGAA GAACATACAA 
    CAACTTCAGA TGACAAACAA ATTCATTCAT CCGATGTTCT GAAGTCAAGA 
    GAAGGTACTT TTTGTGTTCC TCGTCCCAGT CAAGAAATTG AAGCTGAGAT 
    AAATCTAAGC TGTGAACAAG AAACTGATAG TCCAATGTCT GTTCTTGACA 
    TGACCTTCCC AGATGATCCT GCTAGTCCAG TGAAATATAC AATCCTGGAT 
    GATTCGTCGT TGAAGCCAAG AGTCCTCCAT TTAAGTGATA CCGATGATTC 
    AGCTGATATG GATCTCAATA CCAGCACTTC CATGGAACTT TCAACTGCTG 
    GCCTGGGTCA CAAAAATGTT CAAGAAAGTG ACTCTGATGA ACTAAGCTCT 
    CTCCAAGCAG ATCCAAAGAA TGAAGATGGG TTGATCTATG TGAAGAATAT 
    ATTCATGAAA TCAAGCTTCC GCAATGAAGT ACTATTTGAT GAATGGTGCT 
    CACAGAACAT TACAGTTCTC CAAGAAGAGG ATTGCCAACA CTACGAGGCT 
    GCTGCCGCTG CATTTGATTT CACTGAGATG TCAGCTGATC AGCTACTTCT 
    GTCTGACTTG ACAAATGAAG TGTTGCTCGA CATCTACAAG AAATATTCTG 
    TTTCCAAGTC CTTGCTCTCC CGGTTTTCGT CTTTTGATAG ACCGAAACCT 
    GTGGGAAACC ATGCCCTCAA GGAATTGTGG TCTAAAGTAA GCTGCCATCT 
    GGATGAACAG CCACAGTCCA GCATAGAAAT TGACACAATT TTGTCGAATG 
    ATCTATCCAA GAACGATCAC TGGGTGAATT TTCAGAGAGA TGCTGATCAC 
    TTGGGGAACA TGTTGGCAGA CTTTGTGTTT GACAGGCTTC TGACAGAGTT 
    CACTCTTCAG CTTGCAAAGT TTTGAGCCTA GCTAGTTTTT TTATTTTGCC 
    CCTAAAAATT TTGTTGGTTT AGCTGTTCTA TATGGTGGAA TGCTATTATC 
    CTCATGTATA TATTAACATT CTTTCTGTTC TCTCCTTGAA GAGAACAAGG 
    TTTGGAGGGG TGGTTGTTAC TTGTTAGGGC TTAGGAATTC AATTCATGTG 
    CTGAAAGGTT TTGAAATTTA TATATTGAGT GGGGTTGAAG GAGC

    Gene models with high sequence identity

    1. AT5G02390.1 [+] show detail - Protein of unknown function (DUF3741)
      E-value: 3e-14; Score: 78.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Hypothetical protein T1E22_150 5.8e-15
    HMMPanther PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRAN 5.8e-15

    See the detailed result >

    AT5G02390.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF3741)
    Computational Description
    CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07620.1); Has 4713 Blast hits to 3576 proteins in 331 species: Archae - 20; Bacteria - 252; Metazoa - 1533; Fungi - 380; Plants - 348; Viruses - 15; Other Eukaryotes - 2165 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR