K20517

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20517

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20517

Determination of introduced cDNA(s)

  • J033124M20 - Rice Full-length cDNAs - Original: J033124M20

    full reading [+] show sequence

    Nucleotide sequence: J033124M20 - full reading
    GACGTACGTA CGGCAATGGA GTCTACGCTG ATCACGATCA CGAGATCGCC 
    CATCCTCCCC TGTCCATTCT CGAGACGGCC CGCCTCGCCC GCGCGCTGCT
    TCGCCGGAGC TCGCCGTAGC CGCTGTGCCG CCGCCTCCGC TTCGTTCTTC
    TCCCCCGCCG GTGGCCGCGG CGGCGGGGAT GCAGGGGCGG GCTCCTCGCT
    CTCCTCCGCC GCGGCCGCGG CCGCGCTCGG CGAGGCGGCG GCGGCGGGTG
    GCGGCGGATC CGACTCCGAG GCCATCCTGC TCAGCGTCCA GGGGATGATG
    TGCGATGGGT GCGCGGCGAG CGTGAAGCGG ATTTTGGAGA GCCAACCTGA
    AGTCACTTCT GCCACCGTTG ATTTTAAGGA AGCAAAAGCA GTTGTCTTGA
    CAACAGCTGA GGTCAAGGCG GCTGAAGATT GGCAAAAGCA ATGTGGAGAG
    AAACTGGCAA ATCACCTGGG CACCTGTGGA TTTGAATCTC GCCTTCAAGA
    GTAAGGAGAA GCCAAATGAA GTCAATCATG GAGATCGAAG ATGAAGTGCA
    GCTGGAGACC TGAAGTTCTG TCCTAGGGCC ACTAATGAGT GCAAGGCCAA
    GTAGAAGTTG CCATGCTGGA GAACTCAGCA GTTACAGCGT TTCTGACATT
    CTGTGCTTTG TGCTATGAGC TAAATCGAAG TGTCAGGATG CTAGCCTCAC
    ATTCACATTT CCCTTGCTCG TGAACTTTTA GAAGGTTCAT TTGGAGGAAA
    TAAAAAGAAT AAAAACATGA CCAATCACAA TGCAAGGATC TTGTACCCCA
    GCTTCTCTCT TC

    Gene models with high sequence identity

    1. AT4G33520.3 [+] show detail - P-type ATP-ase 1
      E-value: 1e-17; Score: 87.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Heavy metal transport/detoxification protein 0.000000000023
    Gene3D no description 0.00000016
    ProfileScan Heavy metal transport/detoxification protein 15.254
    PatternScan Heavy-metal-associated, conserved site 0
    HMMPanther COPPER-TRANSPORTING ATPASE PAA1 0.000000000000054
    HMMPanther ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter 0.000000000000054
    superfamily Heavy metal transport/detoxification protein 0.0000000001

    See the detailed result >

    AT4G33520.3

    Model type
    Protein coding
    Short Description
    P-type ATP-ase 1
    Curator Summary
    Encodes a putative metal-transporting P-type ATPase.
    Computational Description
    P-type ATP-ase 1 (PAA1); FUNCTIONS IN: copper ion transmembrane transporter activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type copper-transporter (InterPro:IPR001756), Heavy metal transport/detoxification protein (InterPro:IPR006121), ATPase, P type, cation/copper-transporter (InterPro:IPR006403), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), Heavy-metal-associated, conserved site (InterPro:IPR017969), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, heavy metal translocating (InterPro:IPR006416), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: P-type ATPase of Arabidopsis 2 (TAIR:AT5G21930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR