K20521

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20521

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20521

Determination of introduced cDNA(s)

  • J013000D16 - Rice Full-length cDNAs - Original: J013000D16

    full reading [+] show sequence

    Nucleotide sequence: J013000D16 - full reading 
    GGGTGGCGAA GCAGCGGCGG AGCGAGAGAA AATCGCTGTA GGAATCGGGG 
    GAGAAGGAGG AGTAGATAGA GGGAGGTGGA TTGAGCTGTG GGAGGTTAGG 
    TTGGTGATTG GTAGAGGAGG AGGAGGAGGA GATGGAGAGG AAGGTGGTGG 
    TGGTGTGCGC GGTGGTCGGC TTCCTCGGCG TCCTCTCGGC GGCGCTCGGC 
    TTCGCGGCGG AGGGCACACG CGTCAAGGTT TCAGATGTGC AAACTTCTTC 
    TCCAGGTCAA TGCATATACC CAAGAAGCCC AGCCTTAGCC CTAGGGTTAA 
    TATCTGCGGT TGCTCTTATG GTCGCCCAGT CTATTATAAA TACAGTGGCT 
    GGTTGCATCT GTTGTAAGAG GCATCCAGTT CCCTCAGACA CTAACTGGAG 
    CGTAGCTCTG ATCTCATTCA TCGTGTCTTG GGCCACTTTC ATAATCGCGT 
    TCCTTCTCCT ACTGACCGGA GCTGCACTTA ACGATCAACG GGGTGAGGAG 
    AGCATGTACT TTGGCAGCTT CTGCTACGTT GTCAAGCCAG GGGTCTTTTC 
    TGGAGGGGCA GTGCTCTCAC TTGCCAGCGT GGCACTGGCA ATAGTTTACT 
    ACGTTGCCCT ATCATCGGCG AAAAGTCCAC CAAATTGGGG TCCCCAGCAG 
    AACCAAGGCA TCGCCATGGG CCAACCTGTG ATCCCTCCAC AGAGCAGCGA 
    ACCGGTGTTT GTCCACGAGG ACACCTACAA TCGGCAGCAA TTCCCATAAA 
    TCATGATCTG TGCAAGCTGT TTCGAGGGCC ATTCTGATAC ATTATGTTTG 
    GTTTGTATAG GCCTCCAGGT TAGAACAGTA GCAGTAACAA TTGTTGTTAG 
    GTAGAGTCAT GTTTTTTGCT TTCTTCTTCC CCCTCTTTCT TGAGCGCTAC 
    TGTCGCACGT TCTGCTTCAT CACAGCGGAT ATTCGATTTT ACATGAACCG 
    GGCAATGTTG

    Gene models with high sequence identity

    1. AT5G17210.1 [+] show detail - Protein of unknown function (DUF1218)
      E-value: 4e-48; Score: 188.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G17210.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1218)
    Computational Description
    Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G61065.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR