K20524

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20524

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20524

Determination of introduced cDNA(s)

  • J023004F17 - Rice Full-length cDNAs - Original: J023004F17

    full reading [+] show sequence

    Nucleotide sequence: J023004F17 - full reading 
    GTGGAGTAGA AGCTGAACAG ATTGGCAGAA GCAGAAGCAG AAGCAAAAGA 
    TGATGAATTC ATCTGAGCCG GTGAAGCTGA TCGGCGCTTT CGGCAGCCCG 
    TTCGTCCACC GTGTCGAGGT CGCCCTGCGC CTGAAAGGAG TGCCCTACGA 
    GCTCATCCTC GAGGACATGG GCAACAAGAG CGAGCTCCTC CTCGCGCACA 
    ACCCCGTCCA CAAGATGGTC CCCGTGCTCC TCCACGGCGA CCGCTCCGCC 
    ATCTGCGAGT CGCTGGTCAT CGTCGAGTAC GTCGACGAGG CGTTCGACGG 
    GCCGCCCCTC CTCCCCGCCG ACCCCCTCCG CCGCGCCATG GCCCGCTTCT 
    GGGTTCACTT CCTCGACGAA AATTGCCTGA AGCCGTTGCG GCCGGCGCTG 
    TTCGGGGAAG GCGAGGAGCA GAAGAAATCC ATGGAGGAGA CACGGGAGGG 
    CCTGACGGTG GCGGAGGCGG AGCTCAGGGG CAAGCGGTTC TCCGGAGGCA 
    GCTCCATCGG CCTCGCCGAC ATCGCCGGCG GTGGCGTGCT GGCTCACTGG 
    GTCGGCGTGC TCCAAGAGGT CGCCGGAGTG AGCGTCCTGA GCGACGGCGA 
    CGGCGAGTAC CCTGCTCTGC GCCGGTGGGC GAAGGATTAC GTCGCTAATG 
    AATCCGTGAT GGAGTGCTTG CCGGATAGAG ATCGGCTCCT CTCCTACTTC 
    ACCGGGATCA AGCAGAAGTG CGTTTCGGTG GCCAAGTCTA CGCTGCCAAA 
    GTACTCCCTT CTTCCCTAAA TATTTACGCA GTTGACTTTT TTAAATATAT 
    TTAACTGTTC GTCTTATTTA AAAACTTTTG TGAAATATGT AATATTATAT 
    ATATACATAA AAGTATATTT AACAATAAAT TAAATGATAG AAAAAGAATT 
    AATAATTACT TAAATTTTTC AAATAAGACG AACGGTTAAA TATTTTTAAA 
    AAAGTCAACG GCGTCAAATA TTTTGGGATG GAGGGAGTAG TTACTAGTGA 
    TGAACGAATA AACTAATAGC GGCGTGCACC TTGTGGCTAA TTGAGTTTCG 
    TCTTTCTTGT CGACGTGTTA TTGTGTTGTC TCTGTTTGTC ACATGCACGT 
    TTGACCGTAT GTACGATTAA TCTTTCGTCA TGATACAGTA CGAGCAAGG

    Gene models with high sequence identity

    1. AT3G09270.1 [+] show detail - glutathione S-transferase TAU 8
      E-value: 2e-43; Score: 173.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLUTATHIONE S-TRANSFERASE 2.1e-96
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2.1e-96
    HMMPfam Glutathione S-transferase, N-terminal 0.0000000025
    HMMPfam Glutathione S-transferase, C-terminal 0.0000004
    superfamily Glutathione S-transferase, C-terminal-like 2.7e-35
    superfamily Thioredoxin-like fold 2.9e-24
    Gene3D Thioredoxin fold 3.6e-16
    Gene3D Glutathione S-transferase, C-terminal-like 1.5e-35
    ProfileScan Glutathione S-transferase, N-terminal 19.836
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 15.572

    See the detailed result >

    AT3G09270.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase TAU 8
    Curator Summary
    Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase TAU 8 (GSTU8); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase tau 7 (TAIR:AT2G29420.1); Has 7045 Blast hits to 7029 proteins in 1100 species: Archae - 0; Bacteria - 3564; Metazoa - 831; Fungi - 183; Plants - 2012; Viruses - 0; Other Eukaryotes - 455 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR