K20538

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20538

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20538

Determination of introduced cDNA(s)

  • J033023F23 - Rice Full-length cDNAs - Original: J033023F23

    full reading [+] show sequence

    Nucleotide sequence: J033023F23 - full reading
    GCGGCAGAAA TATTGGCTGC AACTTCAACA ACCAGATCAT CAGATCACGT 
    AGCAAGAATA GTTTCAGAAT TCAGAGAGAG AGAGAGAGAG GTGATTGATG
    GGCAGCTCAT CAGGGCTAGT GGACTGGAGG GGGAGGCCGG TGGACACCAA
    GAAGCATGGA GGTGTCAGAG CATCCATCTT CATCCATGCG ATGGTGCTGT
    TGACCAACGC GCCCAACATC GCCAACATGA TGAACATGGT GAGCTACCTG
    CGGGGCACCA TGCACATGGG CGTGGCGCAG GCGTCGACGA CGGCGAGCAA
    CTACTTCGCC GCGCTGCAGA TGTTCTCCAT CCCGGCCGCC TTCCTCGCCG
    ACTCCTACCT CAAGCGCTTC TACACCGTCC TCCTCTTCGC GCCTATCGAG
    ATCATAGGCT ACATCCTTCT AGCAGTTCAA GCGTACACCA CCTCGCTGCA
    CCCGCCGCCG TGCAGCCCGG CGGCCACGGC GGCGAGCGCC ACCACCACCT
    GCGAGCCGGT GCGCGGCGCG AACCTGAGCC TGCTGCTGCT GGGGCTGTAC
    CTGATCCCGA TCGGCGACGG CGCGGCGAGG GCGTGCCTGC CGGCGCTGGG
    CGGGGACCAG TTCGACCTGG GCGACCCGGA CGAGCAGCGG CAGGAGACGA
    GCTTCTACAA CTGGTACACC TTCGCCGTCT CCACCGGCGG CTTCGTCGGC
    CTCGTCTTCA TCGTGTGGGT GCAGAACAGC AAGGGGTGGG GCGTCGGCTT
    CGCCGTCTCC GCCGCCTTCG TCGCGCTCGG CTTGCTCGTC TGGGCCGCCG
    CCTTCCCGCT CTACCGGAAC CAGCTGCCGA TGGGGAGCCC CATCACAAGA
    GTATTGCAGG TTTTTGTAGC GGCATTCAAG AAAAGAAACG TCCGGTTGCC
    GGAGAATCCC AGCGAATTGA AGCAAATTAA CCAAGATGAC GATGCCAATG
    CCCACGAAGT TCTCCCCAAA ACAGATGGAT TTCGGTGCTT GGAGAAAGCG
    GCAGTGGAAA CTGGCAATGA CGCTGGGCCA TGGTCTCTGT GCAGCGTGAC
    CCAGGTGGAG GAGACCAAGA TCGTGCTGCG CATGGCGCCC ATCTTCGTGG
    CCGCTGTTCT CAGCTACATC CCGGTGCCGC TGCTCCTCAG CCTCACCGTG
    CAGCAGGGCA ACACCATGGA CACCAGGCTC GGCGCAGTCC ACATCTCGCC
    GGCGACGCTG TTCCTCATCC CGACCGTCTT CCAGATGGTC ATCCTCATCA
    TCTACGACCG CGCCATCGTG CCGCCGCTGC GCAGGCTCAC GGGCTACGTC
    GGTGGAGTCA CCCACCTCCA GCGGATCGGC ATCGGGTTCG TCGCTACTAT
    CGTTGCCACC GCAATCGCCG CGGTGGTGGA GACGAGGAGG AAGATGACCG
    CCGAGGAGAG CGGGCTAGAG GACGCCACCA CTGGGATCCC GCTGTCCGTG
    TTCTGGCTGA CGCCGCAGTT CTTCCTCATT GGCATTGTCG ACGTCACCTC
    CTTCGTCGGG CTCCTCGAGT TCTTCTGCAG CGAGGCGTCC ATGGGGATGA
    AGTCCATCGG CAGCTCCATC TTCTACTGTA TCCTCGGTGT ATCAGCATGG
    CTCGGCAGCC TTCTCATCCA GGTCACGAAC CGTGTCACCC AGCGAACCAA
    CGGCGGAGGG TGGCTGGATG GGGCCAATTT GAACAAGGGC AAGCTCGACC
    GGTTCTATGT CGTCCTCTGC ATCATCGAGG TGGTGGCGCT GGTGATCTAC
    GTGTTCTTCG CGAGGAGGTA TGTATATAGG AATGACCAGA GGGTTGTGGC
    CCAAGAGCAG AGGAAGGGTG ACACGGGGAA TGGTATGGCT GTGATCTAAA
    CTTGAAATGA AATGAGTCGT GTTTATATTT ACATGGATGT AACGATATAT
    ATGGTAGTAA TAGTAAATAA TTTGGTGGTA CGAGG

    Gene models with high sequence identity

    1. AT1G27040.2 [+] show detail - Major facilitator superfamily protein
      E-value: 8e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oligopeptide transporter 3.1e-63
    superfamily Major facilitator superfamily, general substrate transporter 5.4e-17
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.5e-178
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.5e-178

    See the detailed result >

    AT1G27040.2

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR