K20540

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20540

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20540

Determination of introduced cDNA(s)

  • J033149F09 - Rice Full-length cDNAs - Original: J033149F09

    full reading [+] show sequence

    Nucleotide sequence: J033149F09 - full reading 
    GGCTTGTTTT TTTCTCAACT CGATCCATCT CTCTCTCTCT CTCGATCTCT 
    CCATTAATTT CTACGTAAGC ATTCGTAGCT ATGGAGGAGT GCAAGGGCGG 
    TGGCATGTCG CCGTCCTCCT CCATGGATAG CAGCACCCAC CCGGCGCTGT 
    CCACGACGTC GTCGGCGGCG ACGGCGAGGC GGGACCTCAG CACCGATCTC 
    CGGCTAGGGC TTAGCCTCTC GACGTCGTCG TCGTCCTCCC TCCGGCGGCG 
    CTCGCCGACG GCGAACGCTG TTCGTGAAGG TGTACATGGA GGGCGTCCCG 
    ATCGGCCGGA AGCTCGACCT GCTCTTGCTG GATGGGTATG ACAGCCTCCT 
    CATCAAGCTC TGCCACATGT TCAAGACGCC CATCACCTAT GCTGATGTTA 
    TGGAGTGCCA TCAACAAGTT CCTGGCCAGA AGGCTGCCCA TGTCCTCACC 
    TATGAAGACC AGGACGGGGA CTGGATGATG GTTGGGGACG TCCCATGGGA 
    ACTCTTCCTG AGCAGCGTAA AGAAGCTCAG GATTGCAAGG ATGGATAAAT 
    GCTAAAACAG TTGCATTTGA ATTTCTCTTT GTTTCTTCTT TTTTTTTTCC 
    CATTGGAGGG AGGGCCCTTA TTATATGTAG GTTAGTTGAA AAAGATTTTT 
    GCTGAAGCTG AGATTATACT TACTAGCAGT GTACATTATA GTAAAGAAGT 
    GTAGCATTAT CAGCTACCTA CCGTATAGCA GAACTGATTA TTATTTTTCC 
    TCTACTTCTT TAACTGGTTT GTAAATATCA TGTATTCGTT AAAGAGAGTA 
    GAGAAGTTGA TAACACAAAG GTTCCATTTT ACCTCAGTGG AATCAAATTT 
    TGTGGCCTTT

    Gene models with high sequence identity

    1. AT3G17600.1 [+] show detail - indole-3-acetic acid inducible 31
      E-value: 3e-18; Score: 89.40

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Aux/IAA-ARF-dimerisation 29.236
    superfamily CAD & PB1 domains 0.0000019
    HMMPfam AUX_IAA 1.4e-32

    See the detailed result >

    AT3G17600.1

    Model type
    Protein coding
    Short Description
    indole-3-acetic acid inducible 31
    Curator Summary
    Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.
    Computational Description
    indole-3-acetic acid inducible 31 (IAA31); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: gravitropism, response to auxin stimulus, shoot system development, root development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: stem, rosette leaf, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 30 (TAIR:AT3G62100.1); Has 1954 Blast hits to 1953 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1953; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR