K20544

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20544

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20544

Determination of introduced cDNA(s)

  • J013024O19 - Rice Full-length cDNAs - Original: J013024O19

    full reading [+] show sequence

    Nucleotide sequence: J013024O19 - full reading 
    GGAGGAACAC AAACCAGAGA TCCAAAAGAA TCCGTCGAGG CCACAGATTG 
    TTCCAGAGTT TTTGTTTTCC TCTTCTCCCC TTCGCGTTAG CGAGCATGTG 
    TCCCGGAGGC AGATACGCGG GCCTCGACGT CCCCGCCTGC GCGGCGGCGG 
    GAGACCTGAG GCCGGCGTTC GACGTGCTGG ACGCGGACCG CGACGGTCGC 
    ATCAGCCGGG AGGACCTCAA GTCGTTCTAC GCCAGCGGCG CGGCCACCAG 
    CGAGCGGTTC GACGACGAGG ACATCGCCGC CATGATCGCC GCAGCCGACG 
    TGGACAACGA CGGGTTCGTG CAGTACGACG AGTTCGAGCG CCTGCTGGGG 
    CGCGCCGCCG CGGGGGCGGG GTGCCGGCCC GCGATGGAGG ACGTGCTCCG 
    GGTGATGGAC CGCGACGGGG ACGGCAAGGT GGGGTTCGAC GACCTCAAGG 
    CGTACCTCGG CTGGGCCGGG ATGCCGGCGG CCGACGAGGA GATCCGCGCC 
    ATGATACGCG TGGCCGGCGG CGGCGACGGC GATGGTTGCG TGGGGCTCGA 
    GGAGCTCGCC ATCGTCCTCG GCTGCTCGCC CACAAATTGG ACCGCATCTT 
    CTCAAACTCT GCATTGATGC ATTGATTGGG AGACTTCAAT TTGTTGGTTG 
    GTGGTGTTGT GGTGATGTGA TTGTTGAGCG ATTTTCGAGT TTCGAGAAGC 
    GTGAGGGATG TTTAATTGGG CGTAACTGCT CCCGAAAATA GGGGTATTAA 
    AAACTCCCCG ATGCAGCTTC TTCCATAGAA AAAAGTTGAA AAGTTTGTAT 
    TGAAGCTGAG CATCGATGGT GTGAGTTGGG GGTAGGTTTT ATTTGGAACT 
    AATGAGATGT TTCTTTTCTC AATCCTTTTT TAAGCAAGTT TCTTTTTCAA 
    TCTGAACCGA AAATTTGTGT AAGATCCTCG AAAAAGAGGA GG

    Gene models with high sequence identity

    1. AT5G49480.1 [+] show detail - Ca2+-binding protein 1
      E-value: 5e-21; Score: 98.60

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    ProfileScan EF-HAND 2 10.106
    ProfileScan EF-HAND 2 11.696
    ProfileScan EF-HAND 2 11.194
    ProfileScan EF-HAND 2 6.061
    superfamily EF-hand 4.8e-26
    HMMPanther MYOSIN LIGHT CHAIN\CALMODULIN 9 2.3e-45
    HMMPanther CALMODULIN 2.3e-45
    Gene3D EF-hand-like domain 4.7e-22
    HMMSmart Calcium-binding EF-hand 0.02
    HMMSmart Calcium-binding EF-hand 0.011
    HMMSmart Calcium-binding EF-hand 1.5
    HMMSmart Calcium-binding EF-hand 75

    See the detailed result >

    AT5G49480.1

    Model type
    Protein coding
    Short Description
    Ca2+-binding protein 1
    Curator Summary
    AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
    Computational Description
    Ca2+-binding protein 1 (CP1); FUNCTIONS IN: calcium ion binding; INVOLVED IN: hyperosmotic salinity response; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 1 (TAIR:AT5G37780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR