K20605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20605

Determination of introduced cDNA(s)

  • J033052E03 - Rice Full-length cDNAs - Original: J033052E03

    full reading [+] show sequence

    Nucleotide sequence: J033052E03 - full reading 
    GGCACGTTTT GCTACGACCA TGGCGTTCTT CCTCCCTCTC GCGTTCTCCC 
    TCTTCCTCGC CGTCATCTCC GCCTACGTCC TCCAGCTCCT CGCCGACGCT 
    CGCCGCCGGC TGCCGCCAGG CCCGTGGCCG CTGCCGCTGA TCGGCAACCT 
    CCACCAGCTC GACCACCTGC CGCACCGCTC CCTCGCGCGC CTCGCCGCGC 
    GCCACGGGCC GCTCATGTCG CTCCGCCTCG GCACCGTGCG CGCCGTCGTC 
    GCGTCGTCGC CGGAGATGGC GCGGGAGGTC CTGCAGCGGC ACAACGCCGA 
    CATCGCCGCC AGGTCCTTCG GCGACTCCAT GCGCGCCGGC GGCCACTGCG 
    AGAACTCCGT GGTTTGCCTG CCCCCGCGCC GCAGGTGGCG CGCCCTGCGG 
    CGGCTCAGCA CCGTCGGGCT CTTCTCGCCG CGCCGGCTCG ACGCCATGAG 
    GGCTCTCCTG GAGGAGAAGG TGGCCGAGCT TGTCCGCCGC GTGTCCGGCC 
    ACGCCGCGCG CGGCGAGGCC GTGGACGTGG GCCACGCCGC GCACGTCGCC 
    GCGCTGGGCG TCCTGTCGCG CACCATGTTC TCCGTCGACC TCGACCCCGA 
    GGCGGCGCGC GAGGTGAGCG ACATCGTGGA CGAGGCGTCG GTGCTGGGCA 
    CCGGGCCGAA CGTCTCCGAC TTCTTCCCGG CGATCGCGCC GGCCGACCTC 
    CAGGGAGTTC GCCGGAGGAT GGCGAGGCTG GTGAAGAGGA TGTACGCCAT 
    CATTGACGAG CAGATCGAGC GGAGGATGCA TGGCCGCACC GCCGGCGAGC 
    CACGCAAGAA CGACCTGCTC GACGTGATGC TGGAGGAGGG GGAGAGTAAA 
    GAAGATAGCA ACGAAATTAA CCGTGATGCC ATCCGTGGAC TTTTTACAGT 
    GAGTACTTGT ACAACTTGCG GACGGATATT AATTTGTGAA TAAAACAAAC 
    TTTT

    Gene models with high sequence identity

    1. AT2G45580.1 [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 3
      E-value: 8e-31; Score: 131.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome P450 4e-49
    Gene3D Cytochrome P450 2.6e-45
    HMMPanther CYTOCHROME P450 SUBFAMILY 76C 2.1e-111
    HMMPanther Cytochrome P450 2.1e-111
    HMMPfam Cytochrome P450 1.6e-27

    See the detailed result >

    AT2G45580.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 76, subfamily C, polypeptide 3
    Curator Summary
    member of CYP76C
    Computational Description
    "cytochrome P450, family 76, subfamily C, polypeptide 3" (CYP76C3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 33927 Blast hits to 33635 proteins in 1732 species: Archae - 48; Bacteria - 3873; Metazoa - 11973; Fungi - 7308; Plants - 9418; Viruses - 6; Other Eukaryotes - 1301 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR