K20618

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20618

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20618

Determination of introduced cDNA(s)

  • J033111J19 - Rice Full-length cDNAs - Original: J033111J19

    full reading [+] show sequence

    Nucleotide sequence: J033111J19 - full reading
    GACCAAAAAT CATCCCCAAT CTTACATCAA CTACCTACTT CCTACGTAGC 
    CCAGTAACTA TACATTATTA AGGCTAACCA GTAACTAACT AAGGCACACG
    TACGCAATGG TGGCGCTCGG ACGCCGTTCA TGGCTGGTCC CGCTGGCCAT
    GGTGCTCGCC GTCTCCAGCT GCCTCGCCGG CCCGGCGATG GCCGCCGGAA
    AGACCGGGCA GATGACCGTG TTCTGGGGCC GTAACAAGAA CGAGGGAACC
    CTCAAGGAGA CCTGCGACAC CGGCCTCTAC ACCACCGTCG TCATCTCCTT
    CTACAGCGTG TTCGGCCACG GCCGCTACTG GGGCGACCTC TCCGGCCACG
    ACCTCCGCGT CATCGGCGCC GACATCAAGC ACTGCCAGTC CAAGAACATC
    TTCGTCTTCC TCTCCATCGG CGGCGCCGGC AAGGACTACT CCCTCCCGAC
    CTCCAAGTCC GCCGCCGACG TCGCCGACAA CATCTGGAAC GCCCACATGG
    ACGGCCGCCG CCCCGGCGTG TTCCGCCCCT TCGGCGACGC CGCCGTCGAC
    GGCATCGACT TCTTCATCGA CCAGGGCGCG CCCGACCACT ACGACGACCT
    CGCCCGCAAC CTCTACGCCT ACAACAAGAT GTACCGCGCC CGGACGCCGG
    TGAGGTTGAC GGCGACGGTG CGCTGCGCGT TCCCGGACCC GAGGATGAAG
    AAGGCGCTGG ACACCAAGCT GTTCGAGCGC ATCCACGTCC GCTTCTACGA
    CGACGCCACC TGCTCCTACA ACCACGCGGG GCTCGCCGGC GTCATGGCGC
    AGTGGAACAA GTGGACGGCG AGGTACCCCG GCAGCCACGT CTACCTGGGC
    CTCGCGGCGG CGAACGTGCC GGGGAAGAAC GACAACGTGT TCATCAAGCA
    GCTCTACTAC GATCTGCTTC CCAATGTGCA GAAGGCGAAG AACTATGGCG
    GAATCATGCT CTGGGACAGG TTCTACGACA AGCAGACCGG TTACGGCAAA
    ACCGTCAAGT ACTGGGCTTA ATTAATTAAC CTACTACTAC TATTTACTGC
    TACTATGCGT TAATTTGTGC GTGTGTGTTT GAGAATAAAA TATGTTGGTG
    TGTGTTGGTT TTTTTATGTA GGTATATGAA TAAAACGAGA TCCATATGTA
    ACGATGGAGA TCTCGAGTTG TTTGTT

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 4e-51; Score: 199.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.6e-93
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 0.00000000000013
    FPrintScan PRICHEXTENSN 0.00000000025
    FPrintScan PRICHEXTENSN 0.00000000025
    FPrintScan PRICHEXTENSN 0.00000000025
    FPrintScan PRICHEXTENSN 0.00000000025
    superfamily Glycoside hydrolase, catalytic core 1.4e-75

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR