K20619

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20619

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20619

Determination of introduced cDNA(s)

  • J013043D02 - Rice Full-length cDNAs - Original: J013043D02

    full reading [+] show sequence

    Nucleotide sequence: J013043D02 - full reading 
    CCTCCAATAG CGACTCCGGC AAGAAGGGCG GCAACCCTCT GGAAGCCATG 
    GGCGCCTTCT TCTCGTCGCA GGTGAACCGC CGGAAGCTGG TCACCAGCGA 
    GAAGCAGGCG CTGGCCACGC GGCTGTCCGC CGGCGGCGAG GCGTTCCCCG 
    GCAGCGAGCA CCGGCCGGCC GACCGGAAGA CGTGGATGGC GGAGCTCGGG 
    CCGGAGCGGC TGCGCGTGCA CCAGCTGGTG TGGCCGGGGA CGCACGACTC 
    GGCGACGAAC AAGATCGGCA TCCCGTTCGT GACGCGCCCC TTCGCGCAGT 
    GCCAGTCGCT GTCGGTGTAC GAGCAGCTCG CCGCGGGCGC CCGCGTCATC 
    GACGTGCGCG TCCAGGAGGA GCGGCGCGTC TGCCACGGCG TGCTCGCAAC 
    CTACTCCGTC GACGTCGTGC TCGACGACGT GAGGAGGTTC CTCGGCGAGA 
    CGGCGTCGGA GGTGGTGATC CTCGAGGTGC GCACCGAGTT CGGCCACGAC 
    GACCCGCCGG AGTTCGGCAG GTACCTGGTG GAGCAGCTCG GCGAGCACCT 
    GATCCCGCAG GACGAGGCGG TGTTCCACAA GACCATCGCC GAGCTCCTCC 
    CGCGGCGGCT CATCTGCGTG TGGAAGCCGC GCAAGTCGCC GGCGCCCAAG 
    CCCGGCGAGC CGCTGTGGAG CGCCGGCTAC CTCAGGGACA ACTGGATCGA 
    CACCGACCTG CCGGAGACCA AGTTCGAGAG CAACGTCAAG TTCCTCGGCG 
    AGCAGCCGCC GGTGGCCGAC CGGAGGTTCT TCTACCGGGT GGAGAACACG 
    GTGACGCCGC AGGCCGACAA CCCGGTGCTC TGCGTCCGGC CGGTCACGCG 
    GCGGATCCAC GGCTACGCCC GCCTCTTCAT CGCCGAGGTC TTCGCCAAGG 
    GCCTCGGCGA CAAGCTGCAG GTGTTCTCCA CCGACTTCAT CGACGGCGAC 
    TTCGTCGACG CCTGCGCCGG CGTCACCAAG GCCCGCGTCG ACGGCGCCGC 
    GTGAGATTGC ATGGCCGGGC CCTGTAGTAA TTAGAGGGGT CGCCGCGTTT 
    AGAGGATTTG CTTCGTTTCG CCGGTGTCGC AGCGTACGTA CAGATTAGTT 
    TGTGTTGTTC GTGTTAGACA CGTGATTTAT GAATGATTTA TTATCATGCA 
    TGTGTTGGGC GTTCGTGTGT GATTTAATTG TTGAAATGTA TATAGTGGTG 
    AAATTGCTCG TGT

    Gene models with high sequence identity

    1. AT4G38690.1 [+] show detail - PLC-like phosphodiesterases superfamily protein
      E-value: 3e-130; Score: 462.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phospholipase C, phosphatidylinositol-specific , X domain 0.000000047
    HMMPanther UNCHARACTERIZED 0.000017
    superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.5e-60
    ProfileScan Phospholipase C, phosphatidylinositol-specific , X domain 11.255
    HMMSmart Phospholipase C, phosphatidylinositol-specific , X domain 0.0026
    Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 3.5e-52

    See the detailed result >

    AT4G38690.1

    Model type
    Protein coding
    Short Description
    PLC-like phosphodiesterases superfamily protein
    Computational Description
    PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT4G34920.1); Has 888 Blast hits to 888 proteins in 280 species: Archae - 0; Bacteria - 676; Metazoa - 61; Fungi - 70; Plants - 52; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR