K20631

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20631

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20631

Determination of introduced cDNA(s)

  • J023121N24 - Rice Full-length cDNAs - Original: J023121N24

    full reading [+] show sequence

    Nucleotide sequence: J023121N24 - full reading 
    GGTGGAGACT GGAGACGGGA GAGAGGAGTA GGTAGCAAAC CCTCCTCTTC 
    TTCTCTTCTC CTTCGTTGGG CGTGGGCGTC GCGAGAGGCG AGATGGCGGC 
    GGCGACGTTG GCGGCGGCGA GCATGGGGGT GGTGACGGAG GTGCTGGGGA 
    GCGACGTCGT CGACGAGGTC GACCAGCCCA TCATCGACTA CATCGCCAAC 
    GTCCTCGCCG ACGAGGACTT CGACTTCGGC GCCCCCGACG GCCACGGCAT 
    CTTCGACGCG CTCGGCGACC TCCTCATCGA CGCTCGGTGC GTCGCCGACG 
    AGGAGCACTG CCTCGAGGTC TGCAGTAAGA TTTGTGAAAA ATTTGGAAAG 
    CATGGCCTGG TAAAACCTAA ACAAGCTATG CGAAGCCTTG TCACTCCTTT 
    ACGTATGAAC GAGGGAATGG ACGATAAGGT TGCCCCCAAA AAGCAAGCTG 
    ATGTATTTGA TGGACCCTTG CTTTCATCAC GTGACAAAGC CAAGATTGAA 
    CGGAAGAAGA GAAAGGATGA GAGACAAAGA GAGGCTCAAT ACCAAACGCA 
    TGTTGCTGAA ATGGAGGCAC TTAGGGCTGG AATGCCTCCA GTATTTGTAA 
    ATCACAATAA CTCTGGTGGG CCAGCTGTTA GGGATATCCA TATGGAGAAC 
    TTCAGTGTTA CTGTCGTGGT CGTGATCTCA TTCAAGATTG CACTGTAACA 
    CTTGCTTTTG GGAGGCACTA TGGTCTTGTT GGAAGAAATG GTACAGGGAA 
    AACCTCTTTT CTCAGAGCTA TGGCGATGCA TGCGATTGAT GGGATTCCCA 
    AGAACTGCCA GATATTGCAT GTTGAGCAAG AGGTTGTGGG CGATGACACA 
    ACAGCTTTGC AGTGTGTTCT GAATGCTGAT ATTGAACGGG TTCAACTTTT 
    GCAAGAAGAA GCTCATCTGG TTCAACGGCA GAAAGATCTA GAGTATGAGG 
    CTGAGTTTGA GCAGAGCGCG TCCAAAAGCA AGGATGGTCT TGACAAAGAT 
    GCTATCAGCA AGAGGCTTGA GGAGATATAC AAACGCCTTG AGTTTATTGA 
    TGCTGATGCT GCAGAGGCTC GTGCAGCATC AATTCTGGCG GGTCTTAGTT 
    TCACTCCTGA AATGCAACGT AAACGCACAA AACAGTTTTC TGGTGGATGG 
    CGCATGAGAA TTGCTCTAGC ACGTGCTCTC TTCATTGAGC CTGATTTGTT 
    GCTACTTGAT GAGCCAACAA ATCATCTTGA TCTCCATGCT GTGTTATGGT 
    TAGAAACATA TCTCCTGAAA TGGCCAAAGA CATTCATTGT TGTATCACAT 
    GCTAGGGAGT TTCTTAATAC GGTCGTCACC GACATTCTTC ATCTGCATGG 
    ACAAAAGCTA CATGCTTACA AAGGTGATTA TGACACATTC GAGAGGACAA 
    GGGAGGAGCA CCTTAAGAAC CAGCAGAAAG CTTTTGAAAC AAATGAGAAG 
    GCCAGATCCC ACATGCAGGC ATTCATTGAC AAGTTCCGTT ACAATGCAAA 
    GAGAGCATCA CTTGTTCAAT CAAGAATCAA GGCATTGGAG CGAATGGAGC 
    ATGTTGATGC GGTCGTCAGT GATCCAGACT ATAAATTCGA ATTTCCAACA 
    CCAGATGACC GCCCTGGACC ACCAATCATC AGCTTCAGTG ACGCATCTTT 
    TGGTTATCCT GGAGGCCCCA CCTTATTTAA AAACTTGAAT TTTGGTATTG 
    ACCTGGACAG CCGCATAGCA ATGGTTGGTC CAAATGGTAT TGGCAAATCC 
    ACTATACTTA AACTAATATC TGGAGATCTT CAGCCAACTT CAGGGACAGT 
    GTTCCGCTCT CCCAAGGTTC GCATGGCTGT ATTCAATCAA CACCATGTTG 
    ATGGGCTTGA TTTAACAGTG AACCCCCTTT TGTACATGAT GAGATGCTAC 
    CCTGGTGTAC CTGAACAGAA ACTGAGGGCA CACTTGGGTT CTTTCGGTGT 
    TACAGGAAAT CTTGCCCTCC AACCAATGTA CACTTTATCA GGTGGTCAGA 
    AAAGTAGGGT TGCCTTTGCA AAGATCACCT TCAAGAAGCC ACACATTATT 
    CTTCTCGATG AGCCTTCTAA CCATCTTGAT CTGGATGCTG TGGAGGCGCT 
    GATCCAGGGT TTACTCGTTT TCCAGGGAGG AGTGCTAATG GTAAAACTAA 
    GATCGTTCAT TTTGGTGTAA AAGCTGATGA CTTGGCATCA TTCTAATTAC 
    AAGCTATATG GGTGACTTGT TATCTTTTAC AGGTGAGTCA CGACGAGCAC 
    CTGATAACGG GGAGCGTGGA TGAGCTTTGG GTGGTGTCGG AAGGCAGGGT 
    GTCGCCTTTC GCAGGCACGT TCAAGGACTA CAAGAAGATG CTCAAGTCTT 
    AATCTAGAGC CAGTGATGAT ATATATACAG AGACAGCGAG TCTACAAAGA 
    AAGACACCAA CATATATATC TGTATCGTGC AGCACCGATG TAACATTTAC 
    CGGCCTGAGG CCAAATCATC ATTTATGTTT ATTTCATGTG GATTTACTG

    Gene models with high sequence identity

    1. AT1G64550.1 [+] show detail - general control non-repressible 3
      E-value: 0; Score: 72.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR19211 6.39998633403535e-17
    HMMPanther PTHR19211:SF18 6.39998633403535e-17
    superfamily P-loop containing nucleoside triphosphate hyd 4.7e-39
    superfamily P-loop containing nucleoside triphosphate hyd 3.1e-37
    HMMPanther ATP-DEPENDENT TRANSPORTER (ABCF1) PLANT 1.4e-272
    HMMPanther ATP-BINDING TRANSPORT PROTEIN-RELATED 1.4e-272
    HMMPfam ABC transporter-like 0.000000000000016
    HMMPfam ABC transporter-like 9e-17
    HMMPfam Protein of unknown function DUF1602 0.000000011
    ProfileScan ABC transporter-like 12.712
    ProfileScan ABC transporter-like 10.824
    HMMSmart ATPase, AAA+ type, core 0.00000000054
    HMMSmart ATPase, AAA+ type, core 0.0057
    Gene3D no description 4.3e-27
    Gene3D no description 2.1e-27
    PatternScan ABC transporter, conserved site 0
    PatternScan ABC transporter, conserved site 0

    See the detailed result >

    AT1G64550.1

    Model type
    Protein coding
    Short Description
    general control non-repressible 3
    Curator Summary
    member of GCN subfamily
    Computational Description
    general control non-repressible 3 (GCN3); FUNCTIONS IN: transporter activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G60790.1); Has 474431 Blast hits to 318649 proteins in 3825 species: Archae - 8686; Bacteria - 390426; Metazoa - 7720; Fungi - 5127; Plants - 4044; Viruses - 51; Other Eukaryotes - 58377 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR