K20701

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20701

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20701

Determination of introduced cDNA(s)

  • J023065M10 - Rice Full-length cDNAs - Original: J023065M10

    full reading [+] show sequence

    Nucleotide sequence: J023065M10 - full reading
    GACCGTTCTC CTTCGCGCCG CCACTCTCTC CGAGCTCTCG CCTCTCCTCC 
    TCCCCCGTCT TCCCTTCGCG CGCGCCACCC CCACACACGC GACCATGGCG
    GCAGTGGCAG GAGGCGCAGC GCGGGCGCTG TCGCAGGCGG AGCAGGACGT
    GCAGATGATG CTCGCCGCCG ACGTCCACCT CGGCACCAAG AACTGCGACT
    TCCAGATGGA GCGCTACGTC TACAAGCGCC GCTCCGATGG TATCTACATC
    ATCAACCTCG GCAAGACATG GGAGAAGCTG CAGCTCGCGG CGAGGGTGAT
    TGTTGCCATT GAGAACCCCC AGGACATCAT TGTCCAGTCG GCCCGCCCCT
    ACGGCCAGCG CGCCGTCCTC AAGTTCGCGC AGTACACTGG CGCGCACGCC
    ATTGCTGGAA GGCATACGCC TGGTACATTT ACCAATCAGC TCCAGACCTC
    CTTCAGCGAG CCCCGTCTGC TCATCCTCAC TGACCCAAGG ACCGATCACC
    AGCCAATCAA GGAGTCTGCT CTGGGAAACA TCCCGACCAT TGCCTTCTGT
    GACACCGATT CCCCAATGCG GTATGTCGAT ATCGGCATCC CGGCCAACAA
    CAAGGGGAGG AACAGCATTG GGTGCCTGTT CTGGCTCTTG GCTAGGATGG
    TTCTGCAGAT GAGGGGTACT ATCCTCCCTG GCCACAAGTG GGATGTTATG
    GTTGATCTGT TTTTCTACAG AGACCCTGAG GAGGCCAAGG AGCAGGAGGA
    GGAAGCTCCA GCACAAGACT TTGCTGCCAT CACTGATTAC ACCGCACCTG
    AACAATGGTC TGCTGACCAG TGGACCTCTG ATGTGGCTGC TCCCCCAGCT
    GCTACTGTTG GTGATTGGGG CGCAGCTCCA GCTCCAGTTG CTGCTGCCGA
    AGGATGGGAT CAAGCAGGAG CACCCGTAGC CACTGAAGCC GCCGTCGTTC
    CACCGGTTGC GCCTACTGGA TGGGACCCGG CAGCTCAACC AGCTGCTCAA
    GGCTGGGATT AGGCTAGGCA ATCACTTTGA GATGTCTTCC GCAGCTTAAG
    TTAAATATTT CCCGAGGCAT GAATGAACAC CCAAAATCCA ATGTGATCAT
    CTATAGCTAC ACCATGAACT CAACTGTTTT TAGGAATTTC TAGCTGAACC
    TGTGTTGTTT GTCCGTCCCT ATTTCGAACA ACAATGCTGT GAGGGTGAGC
    TCGGCAAGAT GTGTGGTATA TGTTAAGCTT TCTACTTTTG TCCTAAGTTT
    ATTCTGTAGC GTTTATATCA ATCTTTTCCT CGGTGCAATG GCATGGTTCT
    ATACGCTCAG TTTGTTATTC

    Gene models with high sequence identity

    1. AT1G72370.1 [+] show detail - 40s ribosomal protein SA
      E-value: 2e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein S2, eukaryotic/archaeal 8.5e-144
    HMMPanther 40S RIBOSOMAL PROTEIN SA (P40) 3e-191
    HMMPanther Ribosomal protein S2, eukaryotic/archaeal 3e-191
    superfamily Ribosomal protein S2 3.6e-72
    PatternScan Ribosomal protein S2, conserved site 0
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    FPrintScan Ribosomal protein S2 4.3e-31
    HMMPfam Ribosomal protein S2 4e-40

    See the detailed result >

    AT1G72370.1

    Model type
    Protein coding
    Short Description
    40s ribosomal protein SA
    Curator Summary
    acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
    Computational Description
    40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 3789 Blast hits to 3785 proteins in 1365 species: Archae - 262; Bacteria - 1853; Metazoa - 688; Fungi - 331; Plants - 191; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR