K20726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20726

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20726

Determination of introduced cDNA(s)

  • J033052F06 - Rice Full-length cDNAs - Original: J033052F06

    full reading [+] show sequence

    Nucleotide sequence: J033052F06 - full reading 
    TGGAGGAAGA AAGCCAGCCC ACCACTCCAG CCATGTGGCG CCGCGCCTCC 
    CACCTCCTCC GCGCCACCGC CACCGCCACC GCCACCGCGG TCTCCCGCCG 
    CGTCCCTCAC CCACATCCCG CCCCCGCAAC CGCAATCTCC ACCGTTCTGC 
    CCGCCCCAAA GCTCGCCTCA TCCTTATCCT ACGCCACCCA AGCCGCGGCG 
    GCGGCGGCCG TGCCGGCGGC GAGGGCCCCG AGAACGGTGG GGAGTCTGCT 
    GCGGCTCAAC GACCTGAGGG ACAATCCGGG GGCGCGGAAG CAGAAGACCC 
    GGAAGGGCCG AGGGATCGGC TCCGGGAAGG GCAAGACGGC TGGCCGCGGC 
    CACAAGGGGC AGAAGGCGCG GGGCACCGCC AGATTCGGCT TCGAGGGCGG 
    CCAGACCCCG CTCCGTCGCC GCCTCCCCCG TCGCGGCTTC AAGAACCGCT 
    TCTCTCTGAC GTTTCAGCCA TGTGGTCTGG GGAAAATTGC AAAGCTCATC 
    AACGCTGGAA AAATTGATTC CTCTGAATTG ATCACAATGA AGACACTGAA 
    GGATACAGGT GCTATTGGAA AACAAATAAA GGATGGAATT CGACTAATGG 
    GCCGTGGAGC AGAGGAAATT AAATGGCCAA TCCACCTTGA GGTATCAAGG 
    ACAACTGCTA GGGCAAAAGC TGCAGTTGAA GCAGCTGGTG GAACGGTAAG 
    ACTGGTGTAC TATAATAACC TTGGATTCAG GGCACTTCTC AAGCCCGAGT 
    GGTTTGCAAA GAAAGGCCGA CTTTTACCTA AAGCAGCAAG GCCCCCACCC 
    AAGCAACGAG ACAAGGTTGA TAGCATTGGC CGCCTGCCTG CCCCAACAAA 
    GCCGCTTCCC TTCACACCAG AAGAATTGGA ATTTGCAGCA AAACGTGAAG 
    CTGCTCGAGT GATTGCGTAG AAGGGAGCAT GAAGATGCTC CTCTGAACTA 
    GAGTTTTGAA TTGGGCATGC ACAAGAATCA ACTGTCCTTT ATTTGAAGGA 
    TCCCTTGGTA GCAAGTTCGG TATGTTTGCT TGTCATTTAG ACCAGTATGT 
    CATTTTTCTT TACCCGTAGT CACATCACCA ACACGTGAGC CAGACAGCAC 
    TGCTATACCT CTTGATCTAA AACTCAAAGA TGCTCGTGTC GCGGTCAACA 
    ACTGCTGTGA GTCCAGCATT TGGATTATTT TAGATATATA TTTAGTTCTG 
    ATATC

    Gene models with high sequence identity

    1. AT5G64670.1 [+] show detail - Ribosomal protein L18e/L15 superfamily protein
      E-value: 6e-76; Score: 281.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L15, bacterial-type 9.9e-56
    HMMPanther 60S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL 1.1e-69
    HMMPanther Ribosomal protein L15, bacterial-type 1.1e-69
    superfamily Ribosomal protein L18e/L15 1.4e-31
    HMMPfam Ribosomal protein L18e/L15 2.4e-18

    See the detailed result >

    AT5G64670.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L18e/L15 superfamily protein
    Computational Description
    Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749); BEST Arabidopsis thaliana protein match is: ribosomal protein L15 (TAIR:AT3G25920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR