K20734

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20734

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20734

Determination of introduced cDNA(s)

  • J033008G16 - Rice Full-length cDNAs - Original: J033008G16

    full reading [+] show sequence

    Nucleotide sequence: J033008G16 - full reading 
    GATAAAAAAC AAAAAAGAAA AAAAATAGAA ACACCTCGTC GGCGTTTAGA 
    AAGGCGGTTG GGGTTCGGCG GCGGCGGCGG AGGCCGGTGA GTATCCGCGG 
    CCGCGCGAAC CAGTCGCCTG AGCTCCCAGA AGCATCCGGC GCTGCGGCTC 
    CTCCGTGATT TGTGTATTTT TCCCCTTGAA TCCCGCGCCG TCGCGGCCGC 
    CGTGTGCTCT TGCCGCCGGC GAGAAGGGGG GAAAACGCCC GCGGAGATGT 
    CGGTCCTCAT CGTGACCAGC GTGGGGGACA TCGAGGTGGA CCTCCACACC 
    GACATGTGCC CCCTCACCAC CAAGAACTTC CTCAAGCTCT GCAAGATGAA 
    GTATTACAAT GGGTGCCTGT TCCACAAGGT GGAGAAGGAT TTCTTGGCAC 
    AAACTGGGGA CCCAACTGGA ACAGGAGCTG GAGGCGATTC TGTATACAAG 
    TTCCTTTATG GTGATCAAGC TCGATTTTTT GATGATGAGA TCCGACCAGA 
    CCTTAGGCAT TCAAAAAAGG GAACTATTGC TATGGCGAGT GCTGGTGAAA 
    ATTGCAATGC CTCGCAGTTC TATATCACCT TGCGGGATGA CGTAGACTAC 
    CTTGATGATA AACACACAGT GTTCGGCATG GTTGCTGAAG GCTTTGACAC 
    GCTGACAAAG ATTAGTGAAA CATATGTTGA TGATAAAGGG AGACCATTTA 
    AGGACATCAG GATTAAACAT ACGTATGTCT TGGATGATCC TTTTGACGAT 
    CCTCCTCAGC TCAGTGAACT TATTCCTGAG AATTCTCCTG TAGGGAAACC 
    ACAGGATGAG ATTGCAGAAG AGCGCTTAGA GGATAGCTGG GTCCCTATGG 
    ATGAAATGGT GGCTCCTGAA GAACTTGAGG AGATGATCCG CTCCAAAGAA 
    GCACATACAA ATGCTGTGAT TCTTGAGAGC GTGGGAGATA TTCCAGATGC 
    TGAGATCAAA CCACCAGACA ACGTTTTATT TGTTTGTAAA CTCAACCCAG 
    TAACACAAGA TGAAGATTTA TATACAATTT TTTCTCGTTT TGGAACTGTG 
    ACATCAGCTG AAATAATCCG TGATTACAAG ACTGGTGATA GCTTATGCTA 
    TGCTTTTATT GAATTTGAGA CAAAGGAGGC TTGTGAGCGG GCATTCTTCA 
    AGATGGACAA TTGTTTGATT GATGATCGAA GAATACATGT TGACTTTAGT 
    CAAAGTGTTT CAAAACTGTG GGGTCAGTTC AGACAAAGCA AAAGAAATGC 
    AAATAAAGAT GGATGCTTCA AGTGTGGCGC CCCTGATCAC ATAGCCAAAG 
    ACTGTGACCA GGGCACTGAG CAGAAAAACA AAGGCCCAAG TTATGTCCTG 
    AAAGATGAAA ACACTCAGCG TGGTGGAAAT AACCGTCGAA GCTATGATCT 
    TGTCTTTGAT GAAGATGGTG AAAATTATAC TGATCAGCAA GATCCTGGAA 
    GTACTGGCCG AAGAAAGATT CAAAGAACAG ATGATCGCAA ATCAGGGCTG 
    CCACCTCGGG GTGACCATGA CAGGATTAGC CGGGAGAGAA CTCACAGTGA 
    TGAGAATGGT AGAGAAGGTG GTAAAGAAGG TGATAGGGAC CGAGGGATTC 
    GTAAGCACGA GGACTACCAC CGTTACAATA AATCTGGTGA ACGGAGCTCT 
    AGTAGATACG ATGATCGTGG CTACAGCAAG CACGAGAGCA GGGGCAAATA 
    TAGGGATGGC AATGATGATT ACAGACGACA ACCGGGAGGT GGCAGTCGAT 
    ATGGCAGGGA TAAGTATGAA GGTGAACGGC GCTACAGAGA AGATGATGGC 
    CATGGAAGGA GTGACCGTCA CAAGAGAGAT GAAAGTGATA ACAGGAAAAG 
    AAGCCCAGAT ACTGGTAAGC ATAGAAGAGA AGACGGTGGT CACCGTGAGA 
    CAAGCAAGCA CAGGGAAAGG AGGCAGAGAG ATGATAGATA GGTCACTGCA 
    TCACCGTCAG TTTTGTCTTG CCTGTTTCTC ATCATACATT GAATTTTGTC 
    ATTCTTAATC CAAAGATAGC ACCAGAACAC TAAACATGTA GCTTAGAATC 
    TGCGTGTAGA CATTATGAGA GCTCCACTGG CTACAGATTG TTGTAACTTG 
    TAGACCTTTT CTTTTCTATA CATGCTCATG GACGTTGTTC T

    Gene models with high sequence identity

    1. AT1G53720.1 [+] show detail - cyclophilin 59
      E-value: 2e-167; Score: 586.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 1e-20
    HMMSmart Zinc finger, CCHC-type 0.00035
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.6e-15
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.6e-15
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.6e-15
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.6e-15
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 26.013
    ProfileScan RNA recognition motif, RNP-1 16.278
    ProfileScan Zinc finger, CCHC-type 9.669
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.5e-42
    HMMPfam RNA recognition motif, RNP-1 1.2e-15
    HMMPfam Zinc finger, CCHC-type 7.2e-06
    superfamily Cyclophilin-like 6.7e-53
    superfamily RNA-binding domain, RBD 2.8e-24
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 8.9e-47
    Gene3D Nucleotide-binding, alpha-beta plait 6.4e-24
    HMMPanther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHI 4.9e-223
    HMMPanther CYCLOPHILIN 4.9e-223

    See the detailed result >

    AT1G53720.1

    Model type
    Protein coding
    Short Description
    cyclophilin 59
    Curator Summary
    Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis
    Computational Description
    cyclophilin 59 (CYP59); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, RNA binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 61647 Blast hits to 39757 proteins in 2942 species: Archae - 163; Bacteria - 9741; Metazoa - 25019; Fungi - 7217; Plants - 5688; Viruses - 226; Other Eukaryotes - 13593 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR