K20738

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20738

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20738

Determination of introduced cDNA(s)

  • J033048C14 - Rice Full-length cDNAs - Original: J033048C14

    full reading [+] show sequence

    Nucleotide sequence: J033048C14 - full reading 
    GGCGAGAGGT ATCATCCAGT TGCACACCGA AAATGGCGGC GGCGGCGGAG 
    AGCAAGGCGG GGAAATCGCC GGAGGAGCTC CTCTGCGCGG CGGCGGAGTC 
    CGGTGACGCG GAGGCCATCA CCGGGCTCCT CGCCGAAGGC GCCGACCCGA 
    CCCACTTCGA TGCCTCCGGG TTGACCCCGC TGATGCACGC GGCCACCGGT 
    GGCCACGCCG CCGTCGTGCA GCTTCTCCTC GACGCCGGCG CGCCATGGAA 
    CGCGCTCTCC CCCACGGGGA TCTCCGCGGG AGACCTCGCC TCCGATTCCG 
    CCACCTTCGA CCTCCTCCTC GACCACGCCC TCCGCTCCGA GCTCGTCCTC 
    GGCACCGTCG CTCGCCGCCA AGCGGGGCCC GCGGACTCCC CCGCCGAGAG 
    CTACCTCGAA TCCAGGGTTT CATTCAGCGA GGAGAGGGTG ATGGACGCGG 
    ATAGCAAGGC CGTGATGATG GAGTGGGAGC GGCCGCTGAT GGAGGCGCAC 
    GCGCGGGCGG TGTGCTCCGG CGGCAAGGTG CTCAACGTGG GATTCGGGAT 
    GGGGCTCGTG GACACGGCGA TCCAGAGGTA CGAGCCCGAG GAGCACACCA 
    TCGTCGAGGC CCACCCGGAG GTGTACGCCC GGATGCTCAA GCTCGGCTGG 
    GGCGAGAAGA AGAATGTCAA GGTCGTGTTC GGACGGTGGC AGGACGTGCT 
    CCCGCAGCTC GGCTCTTATG ATGGTATATT CTTCGACACC TATGGAGAAT 
    ACTACGAGGA TATGAGAGAG TTCCACCAAC ATCTTCCTAA GCTATTGAAG 
    CCTGGAGGGA TCTACTCGTA TTTCAATGGC CTCTGTGGCG ATAATGCCTT 
    CTTCCACGTT GTGTATTGCC AGCTCGTAGC GTTAGAGTTG GCAAATCTTG 
    GCTACTCGAC ACAGTTCATC CCGCTCCCAG TCAAAGATTG TCTTTCAGAG 
    GAAATATGGA ATGGGGTGAA GCAGAAATAC TGGCAATTGG ATACTTACCA 
    CCTCCCAGTT TGCCAAGCAG AATCAGAACC GGAGCAATAA TCCAATGGAT 
    TGTCAGCAAA TTGTGCTAAG CGTCAATGGC CAGCAAATTG TGCTAAGCGT 
    CAATGGCTGG CTGCTTTGGC TGCTGCTACG TTTGTTCAAG CGTGTTTCTG 
    AATTCCATAC ACCATCTCCG GAGCTGGAAC TTCCATCGGG CATGTGACGT 
    TTCCACTGCA ATCGACTACT AATCTACTCC TGTAGATGCT TATCGGCTGT 
    GGCCTGTAGC CAATGAAAGA GAACTTTCAC CGAAACTTTG TTTTCTTGGC 
    AGTGATGTTA CAATTTTGTT AGGTCTGCGA ATGCTGCTGT TTTTTTTTCT 
    TTTTTTCGTT CCAAGCCGCC CGTGTCGTTG TTCTGGAAAG GCGGGAACAA 
    CACCTAGCTT TCCCAGTTTT TTTTCTCAAT GTTCTGGACG CGGTTCTCTT 
    CTTTTCTGCA GCAAACAAGG ATAGTTCGAA CTCGTTACTC CT

    Gene models with high sequence identity

    1. AT5G65860.2 [+] show detail - ankyrin repeat family protein
      E-value: 3e-130; Score: 462.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ankyrin repeat 0.000000056
    HMMPIR Arginine N-methyltransferase 2 1.1e-166
    superfamily S-adenosyl-L-methionine-dependent methyltrans 7.3e-32
    superfamily Ankyrin repeat-containing domain 3.8e-16
    HMMPanther ANK REPEAT-CONTAINING 0.000000002
    HMMPanther ANKYRIN REPEAT-CONTAINING 0.000000002
    HMMSmart Ankyrin repeat 1800
    HMMSmart Ankyrin repeat 0.00071
    ProfileScan Ankyrin repeat 11.594
    ProfileScan Ankyrin repeat-containing domain 17.077
    Gene3D Ankyrin repeat-containing domain 0.0000000000015
    Gene3D no description 2.8e-62

    See the detailed result >

    AT5G65860.2

    Model type
    Protein coding
    Short Description
    ankyrin repeat family protein
    Computational Description
    ankyrin repeat family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Arginine N-methyltransferase 2 (InterPro:IPR017408), Methyltransferase type 11 (InterPro:IPR013216), Ankyrin repeat (InterPro:IPR002110); Has 14669 Blast hits to 7820 proteins in 738 species: Archae - 65; Bacteria - 1760; Metazoa - 7798; Fungi - 1170; Plants - 439; Viruses - 38; Other Eukaryotes - 3399 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR