K20745

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20745

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20745

Determination of introduced cDNA(s)

  • J023107C01 - Rice Full-length cDNAs - Original: J023107C01

    full reading [+] show sequence

    Nucleotide sequence: J023107C01 - full reading 
    GAGCAGAGCA GCGCATCTGC ATCCAAAACC AAACCCAAAC TCGTCTTCTC 
    CACCGGAGCA GAGCAGCGGC GGCGGCAATG GACGCCCTCC TCGTGGAGAA 
    GGTCCTCCTG GGCCTGTTCG TGGCGGCGGT GCTGGCCCTA GTGGTGGCCA 
    AGCTCACCGG GAAGAGGCTC CGCCTCCCGC CCGGCCCCGC CGGCGCGCCC 
    ATCGTCGGCA ACTGGCTCCA GGTCGGCGAC GACCTCAACC ACCGCAACCT 
    GATGGCGCTG GCGCGGCGGT TCGGCGACAT CCTCCTCCTC CGCATGGGCG 
    TCCGCAACCT GGTGGTGGTG TCCAGCCCGG ACCTCGCCAA GGAGGTGCTC 
    CACACCCAGG GCGTCGAGTT CGGCTCCCGC ACCCGCAACG TGGTGTTCGA 
    CATCTTCACC GGGAAGGGGC AGGACATGGT GTTCACCGTG TACGGCGACC 
    ACTGGCGCAA GATGCGGCGG ATCATGACGG TGCCCTTCTT CACCAACAAG 
    GTGGTGGCCC AGAACCGCGC GGGTTGGGAG GAGGAGGCGA GGCTGGTGGT 
    GGAGGACGTC CGCCGCGACC CCGCCGCGGC GACCTCCGGC GTGGTGATCC 
    GGCGAAGGTT GCAGCTGATG ATGTACAACG ACATGTTCCG CATCATGTTC 
    GACCGCCGTT TCGACAGCGT GGACGACCCG CTCTTCAACA AGCTCAAGGC 
    CTTCAACGCG GAGCGCAGCC GCCTCTCGCA GAGCTTCGAG TACAACTACG 
    GTGACTTCAT CCCCGTCCTC CGCCCCTTCC TCCGCCGCTA CCTCGCACGC 
    TGCCACCAGC TCAAGTCCCA GCGCATGAAG CTCTTCGAGG ACCACTTCGT 
    CCAGGAACGC AAGAGAGTGA TGGAACAGAC TGGTGAGATC CGGTGCGCCA 
    TGGACCACAT CCTCGAGGCC GAGAGGAAGG GCGAGATCAA CCACGACAAC 
    GTCCTCTACA TCGTCGAGAA CATCAACGTT GCTGCTATCG AGACGACGCT 
    GTGGTCGATC GAATGGGGAA TCGCGGAGCT GGTGAACCAC CCGAGCATCC 
    AGTCGAAGGT GCGGGAGGAG ATGGCGTCGG TGCTGGGCGG CGCGGCGGTG 
    ACGGAGCCGG ACCTGGAGCG GCTGCCGTAC CTGCAGGCGG TGGTGAAGGA 
    GACGCTGCGG TTGCGCATGG CGATCCCGCT GCTGGTGCCG CACATGAACC 
    TCGCCGACGG CAAGCTCGCC GGCTACGACA TCCCCGCCGA GTCCAAGATC 
    CTGGTGAACG CGTGGTTCCT CGCCAACGAC CCCAAGCGGT GGGTGCGCCC 
    CGACGAGTTT AGGCCGGAGA GGTTCCTGGA GGAGGAGAAG GCCGTGGAGG 
    CGCACGGCAA CGACTTCCGC TTCGTGCCCT TCGGCGTCGG CCGCCGCAGC 
    TGCCCCGGGA TCATCCTCGC GCTGCCCATC ATCGGGATCA CGCTCGGCCG 
    CCTCGTCCAG AGCTTCGACC TGCTGCCGCC GCCCGGGATG GACAAGGTGG 
    ACACCACCGA GAAGCCCGGC CAGTTCAGCA ACCAGATCCT CAAGCACGCC 
    ACCGTCGTCT GCAAGCCCAT CGACGCCTAG GTCGATCGAT CGACCTACTC 
    AAATCAATCA TGTGCTGCGT TATCCTATTG CACTAAAAAA AGGTTGTATT 
    TTTGTTTGGG GGGGGGGGGG GGGTAGTTAT GTGTGTGTTC TGTGAGGCAG 
    GCACCTGTTG TTGTAGGTTT ACTTAACTTT TTTTTTTCTT ATACTTGTTG 
    GTTCAAACTT AATTATTGGT AATCTATACT GCCCAAACAT TGCAAATATA 
    TCATTTCTGG CTATTTACAC TTCATCAAGA CAAATTCC

    Gene models with high sequence identity

    1. AT2G30490.1 [+] show detail - cinnamate-4-hydroxylase
      E-value: 0; Score: 717.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, E-class, group I 1.2e-53
    FPrintScan Cytochrome P450, C-terminal 3e-07
    FPrintScan Cytochrome P450, C-terminal 3e-07
    FPrintScan Cytochrome P450, C-terminal 3e-07
    superfamily Cytochrome P450 4.9e-110
    Gene3D Cytochrome P450 1.3e-102
    HMMPfam Cytochrome P450 5.9e-107
    PatternScan Cytochrome P450, conserved site 0
    HMMPanther CINNAMATE 4-HYDROXYLASE 0
    HMMPanther Cytochrome P450 0

    See the detailed result >

    AT2G30490.1

    Model type
    Protein coding
    Short Description
    cinnamate-4-hydroxylase
    Curator Summary
    Encodes a cinnamate-4-hydroxylase. Mutations in this gene impact phenylpropanoid metabolism, growth and development.
    Computational Description
    cinnamate-4-hydroxylase (C4H); FUNCTIONS IN: trans-cinnamate 4-monooxygenase activity; INVOLVED IN: in 9 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 98, subfamily A, polypeptide 3 (TAIR:AT2G40890.1); Has 31278 Blast hits to 31002 proteins in 1609 species: Archae - 48; Bacteria - 2734; Metazoa - 11804; Fungi - 6596; Plants - 9113; Viruses - 3; Other Eukaryotes - 980 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR