K20802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20802

Determination of introduced cDNA(s)

J033136J23 - Rice Full-length cDNAs - Original: J033136J23

full reading [+] show sequence

GGGGCGCCGC CGCCGCCGCC GCCTCCTCCT CGCAGACAGA AATGGCGACT 
CCGCCGCCGC CTCGTACCGG AGACAGAAAT GGCGACGCCT CCCCATGTTG 
GAAGTATCTA TTCCTTCCTT TGGATCGTGT GCAGGTCAGC ATCTTCCAAG 
CTCCTGTACC TACCTGGCTA GCTGGCTCCA TCTCGGACTC GATCCAAACA 
GGGAGAAAGA CAAGGGTTAA AGTGCGCAGA TTCGCCGTGG GGGGACATGG 
CGCACTGTCA CCGATAGCGC CAAATTTGGC CACTCACTTA GTCACTTGTA 
TATGAACTGG GCGACGACTG ACTCACCGCA CCTTCCGCCC CGGCGGCTCG 
AGCGAGCAGG GCAGTGCGCT ACCTCCACCC TGACCCTGAC AAGACTTTAG 
TTGACTCCAT AGAGATTGCT CGCCGTGTTG TTCCGATCTC TTGTTGGCGA 
TCGCTGATTG CTTCGGATTT CTTGCAACCA TAAATATTAT AGGGTTGCCT 
AGTTGGAAAG CAAATAGGAT ATGGAGAATC AATCAGGACA ACCGCAGTAC 
GCCATGGCTG ACCAAGGATT CCACCCTTTC TCACCATTCA TGTTGGCGCC 
TTCTACTACC ATGCAGCAGC ATGTGGGCTC CTCATCCAGC ACGCCAGTAA 
TTCAAGTGGC AGCTCTGCCG TCTCATGCAT ATTATGGTAA CATAGATGTA 
GCTGATGATG GATTCCACTG GAGGATGTGT GGGCAGAGTA CAATTCAGGG 
TGGATTGTGT CCAACGGTAT TCTCCTATCA ATGTGCCCTA CCAAACTGCG 
GGGTCCGGAA ATCGATAACA CGCTCTGCAG ATGGACAGAC CATCGAAACA 
GTTTGCAAGG GCTGTCACAA CCACCCACGA CAGTCACTAA GGTGGCTCGG 
AGATGGTTCA GAGCGATTGG AGCCTATTTC TCAAGAAATT GTGCTACTTG 
AGGCATCAGA TGCCTCAGGA GCTGCTGGTG GACCTTCAGT GCCTGGGACG 
GGAAATGGGC ACGGCCAGTC GTCTGGTTCA AGTGATAGCT GCAGAGACGA 
TGATGGTGAT TTAGGAATTG ATGGGAATGC TTCTGTTGGT GATGCCAATG 
CAGTGAAAAG CGGACAGGTC CCAGCTCCAG CCAAAGAGAT CACTGTGCAC 
TCTGCATGTG AGGTTGATAT TTTGAATAAC AGTGTTCGTC ATGAAAACCC 
ACAACCAAGG AAAAAGGTGC GATCTAAGTC CACGGTGTGG GAGGAATTTG 
AAGTTGTGTT AATTGATGGA AAGGTTCAAA CCGCTGAATG TAAGCATTGT 
AAAAAAAGGC CTCAGTGCAA AAACTTCAGG AGGAACCAGC CACCTAATAC 
GACACTTGAA GATCTGTCCT GCACAGCATG GAACCAGTAG GGTTCAGAAA 
AAATGTTCTT CACTGGCTGA TCTACCTATT GTAAAGAGCT GGAAAGATGA 
TCAAGAAAGT TCTCTTGACG AGATTATTAG GTCAATAGTC TCAAACCTTT 
GCCCCTTCTC TGCCATGTAC AGTGCAAGCT TTGCACAGTT TCTAGCTGGT 
AGAAATCCGG TTCTTAACAT GGTGCAGCAA GCTACCGTTG AGGAAAAGTT 
TCTTAGTGTT TTTCATAACG AAAAGATGAA GCTGAAGGAG AAAATAACAG 
CTACACCTGG GGGAGTTTTC CTGTCACTAG GCGAGTGGCA GCGGTTATTT 
TACATTCAAG TAAGAGTTGC TTGTTTAACT GTGCATTTTA TAGATGAGGA 
CTGGAAGATC AATAGAAAAA CAATAAGATG TTCTCTTTCA GTATTTGGCA 
AGTCTGATAT TTTAAGCTTG TACCCGCATT GGCAATCTGA CATTGTTCTT 
GCTGAGAAGG TGTTAAAGGA AGTAGTTCAA GATTGGGGTC TTTTGGATAA 
GCTTTTAGGA GTGACACTAC AGCGATCAGT GGATAAGAAA GCTCCATTAC 
ACTTGGAGGA TGACATTACA GGAAGGAACT ACCTTCTTTC CAAATGCAGG 
CTATTAAGTA TCCCTTGTAT GGTAGATGCC CTTCATGAAC TTATGGACTC 
CACCGTTTTG GACATGGAAT CGACATGGTC TCATTACATG ACAAGCTCCC 
CAGAGCGTAA GCAGAAATAT CAGGAAATTC TATCACAGCT GCATCTAGAC 
CGTCCCTCTC TCGGATCAAA AGGCTGGTAC TTCACATTCT ATTTTTCTGA 
GGCTGCTTTG CAGTTCATCA AATCATTTCC ACTTCCAGAT GCTAAACCAA 
ATTGCCAATC AGGTCCTTGG GAGCCATCTT TTGATGATCT CGAAGCAACA 
GAGAACTATT GCAAGATTGC AAGGTCAGCC TATCGTGTAA TAAAAGTAGT 
TTCTGGTCCT CACAATATGA CATTTAATTC ATACTTCCAT GTGATCTGGA 
GCTTGAGAGC AGCTATACAA GAACTGCCTA GTATAAAAAA TATTGGAAGA 
GTTTTTGATG TGGCATATAT GCAGAAGAAA TTTGACAGAA ATTGGAAGAA 
GTGGTACTTG TGGCTGTCGA TAGCTGTGGT TCTAGATCCC AGATATAAAC 
TCGGATTCAC TGAACTTTGC TTCAGGCAAG CTTTTAGCCA TGTTGCTGGA 
ATGTATTTCT CCGAGGTGCG TGCAAAGCTT CATGAGCTAT ACATTCAATA 
CTCTTATGTG AATGAGCAAA GTAAGGAGAT ATTGGATCAC AAGAACAATT 
GTTCAGATAT ACAAATTAGT GCTCCATTAC ATAACAAGGG CCAGAATTCT 
ACCACAGCCC AAGCTGCAGT TGAGGAATTC AAAGAGCTTT ATGAATATCT 
TGGTGGGGGA CTCTGTACTC AAGACGATTC TTTTGATATT CTGAAATGGT 
GGAGGGGTAA CTCATCTGCA TACCCAACTC TTGCTATGAT GGCACGCGAT 
ATTTTAGCAA TACCTGGATG TGCAGTTTCT ACTGAATCTG CATTTGATCA 
GTGTGATCAA CGGGCGGAGC TATTTGATGG AAAATTGCGA CCTGAGACAA 
CAGAAGCACT TATATGTGCC CAAAGCTGGA TCAAATCATC TGGAACAGCT 
GATGCGGATG ATGGAAATAA GAACACTTCG TTTTAACCTG CAGTGACCTA 
CGTTGGGTAC ATCCAGCTCC GTTGGTTTGT TACAGTTGTT CAGCTGGATT 
TCCTGTTTCC CATATATCTC TGCTTCTGCA TGATCAATAA CACCTGCAGC 
AGTTCTACTC TCTGCTTTTC ACCGGGCCAT GATTATGAGA TCAGGTTTTA 
CTGCACTCGC TGGAGAAATT AAAAGTCTTT TATCTATATA AGCAAAGGAT 
TGTGTTTTGT TTGGAAAATA CTCGTATATT TTCCTGAGCT GTTATTATCG 
TTCAATATTA CCTTACAATG GTTTGTAATC ATGATATGAG GAAGAATGTA 
AAACACAATG TCAGTATAAT TTCAAATGGC TGTGCATGTT GAGCCAGTAA 
TGTTTGTG

Gene models with high sequence identity

AT3G42170.1 [+] show detail - BED zinc finger ;hAT family dimerisation domain
E-value: 2e-45; Score: 181.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	DNA-binding WRKY	0.0000000000012
HMMPfam	HAT dimerisation	1.5e-17
HMMSmart	DNA-binding WRKY	0.00000091
Gene3D	no description	0.000000000016
ProfileScan	DNA-binding WRKY	12.3

See the detailed result >

AT3G42170.1

Model type: Protein coding
Short Description: BED zinc finger ;hAT family dimerisation domain
Curator Summary: transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.
Computational Description: BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link: InterPro Scan - TAIR