K20804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20804

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20804

Determination of introduced cDNA(s)

  • J023037N12 - Rice Full-length cDNAs - Original: J023037N12

    full reading [+] show sequence

    Nucleotide sequence: J023037N12 - full reading
    GGCAGTCGTC GCGCTCGTCG GCGTCGCGCC ACCTCGCCGC CGCCCAAACA 
    AAATCCTCGG CGAGGAGGAG AGGCGAGATC GCGATTCCGC GAGCGCTCTG
    CTCTCCGGGA GGCGATGGCG GCGGCGGCGG AGGAGGCCGG CCTCGGCCAC
    CCGTCGAGGT ACGTGCAGCT GACGAGGGAC CAGGACGCGC CCGCCGACGA
    GGACATCCGC CCCGGCGAGC TCAACCTGCC GGCCCACTTC CCGCAGCTGG
    AGCAGAGGAG GTGCTGCGAG TGCGGGCAGC AGCTGCCGGA GAGCTACGAG
    GCGCCGGCGG ACGAGCCGTG GACCACCGGC ATCTGCGGAT GCGCCGAGGA
    CACCGAGAGC TGCTGGACTG GATCATTCTT CCCTTGTGTG CTGTTTGGAC
    ATAATGTTGA GGCCCTAAGA GAAGATATCC CATGGACTAC ACCTTGCACT
    TGCCATGCTG TTTGTGTTGA AGGTGGCATT GCATTAGCAA TCCTAACAGT
    GATATTTCCT GGTATTGATC CAAGCACATC AATCTTGATT GGTGAAGGAC
    TGGTGTTTAG TTGGTGGTTA TTTGCTACCT ATACTGGAAT TTTTCGTCAA
    CAACTCCAGA GAAAATATCA TCTCAAGGAT TCACCGTGTG ATCCTTGCCT
    GGTCCATTGC TGCCTGCACT GGTGCGCGAA CTGTCAGGAG CATCGAGAAA
    GGAAGGGCCG TCTTGCAGAT AACAACGCTA ATCGGAACAC CATCGTCAAC
    CCCCCACCGA TGCAAGAAAT GAGCGTGGTC GGGAATCATC CCAGCATTAC
    ACCAGAGAAT GGAGCAGCAT GAACGGTTGT CAGTGAGCAT GAAGCTGTGC
    AGGACATACC ATCATAATAA AACAGTAAAG ATACAAGACA AGCATAGGAA
    TATATGAATA ACATAAGAAA TGAAACTGAC CTTTGTAACC CGTGTGCCTT
    TTACCGGAGT AGGTGTTAAG AGAACGTCTC TCAAGGTATC GGCATAAGTA
    GTTCCATAAC TGGTTGAACA CTTGGAACAT TATTAGACCC ATCGTTTACT
    AAAAGAATGC TCTTTTCATA TTGGGAATGA TT

    Gene models with high sequence identity

    1. AT2G45010.1 [+] show detail - PLAC8 family protein
      E-value: 9e-84; Score: 307.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Protein of unknown function Cys-rich 8.2e-43
    HMMPfam Protein of unknown function Cys-rich 6.8e-26

    See the detailed result >

    AT2G45010.1

    Model type
    Protein coding
    Short Description
    PLAC8 family protein
    Computational Description
    PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G51400.1); Has 558 Blast hits to 557 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 22; Plants - 524; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR