K20804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20804

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20804

Determination of introduced cDNA(s)

  • J023037N12 - Rice Full-length cDNAs - Original: J023037N12

    full reading [+] show sequence

    Nucleotide sequence: J023037N12 - full reading 
    GGCAGTCGTC GCGCTCGTCG GCGTCGCGCC ACCTCGCCGC CGCCCAAACA 
    AAATCCTCGG CGAGGAGGAG AGGCGAGATC GCGATTCCGC GAGCGCTCTG 
    CTCTCCGGGA GGCGATGGCG GCGGCGGCGG AGGAGGCCGG CCTCGGCCAC 
    CCGTCGAGGT ACGTGCAGCT GACGAGGGAC CAGGACGCGC CCGCCGACGA 
    GGACATCCGC CCCGGCGAGC TCAACCTGCC GGCCCACTTC CCGCAGCTGG 
    AGCAGAGGAG GTGCTGCGAG TGCGGGCAGC AGCTGCCGGA GAGCTACGAG 
    GCGCCGGCGG ACGAGCCGTG GACCACCGGC ATCTGCGGAT GCGCCGAGGA 
    CACCGAGAGC TGCTGGACTG GATCATTCTT CCCTTGTGTG CTGTTTGGAC 
    ATAATGTTGA GGCCCTAAGA GAAGATATCC CATGGACTAC ACCTTGCACT 
    TGCCATGCTG TTTGTGTTGA AGGTGGCATT GCATTAGCAA TCCTAACAGT 
    GATATTTCCT GGTATTGATC CAAGCACATC AATCTTGATT GGTGAAGGAC 
    TGGTGTTTAG TTGGTGGTTA TTTGCTACCT ATACTGGAAT TTTTCGTCAA 
    CAACTCCAGA GAAAATATCA TCTCAAGGAT TCACCGTGTG ATCCTTGCCT 
    GGTCCATTGC TGCCTGCACT GGTGCGCGAA CTGTCAGGAG CATCGAGAAA 
    GGAAGGGCCG TCTTGCAGAT AACAACGCTA ATCGGAACAC CATCGTCAAC 
    CCCCCACCGA TGCAAGAAAT GAGCGTGGTC GGGAATCATC CCAGCATTAC 
    ACCAGAGAAT GGAGCAGCAT GAACGGTTGT CAGTGAGCAT GAAGCTGTGC 
    AGGACATACC ATCATAATAA AACAGTAAAG ATACAAGACA AGCATAGGAA 
    TATATGAATA ACATAAGAAA TGAAACTGAC CTTTGTAACC CGTGTGCCTT 
    TTACCGGAGT AGGTGTTAAG AGAACGTCTC TCAAGGTATC GGCATAAGTA 
    GTTCCATAAC TGGTTGAACA CTTGGAACAT TATTAGACCC ATCGTTTACT 
    AAAAGAATGC TCTTTTCATA TTGGGAATGA TT

    Gene models with high sequence identity

    1. AT2G45010.1 [+] show detail - PLAC8 family protein
      E-value: 9e-84; Score: 307.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Protein of unknown function Cys-rich 8.2e-43
    HMMPfam Protein of unknown function Cys-rich 6.8e-26

    See the detailed result >

    AT2G45010.1

    Model type
    Protein coding
    Short Description
    PLAC8 family protein
    Computational Description
    PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G51400.1); Has 558 Blast hits to 557 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 22; Plants - 524; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR