K20812

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20812

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20812

Determination of introduced cDNA(s)

  • J033093J18 - Rice Full-length cDNAs - Original: J033093J18

    full reading [+] show sequence

    Nucleotide sequence: J033093J18 - full reading 
    GTGTTGAGGA AGTCGGAAGT CCGAAGGCAT GGCAGCGGCG GCGGCGAGGC 
    AGACGGTGTG CGTCACCGGC GCCGGGGGGT TCATGGCCTC GTCGCACGTC 
    GAGCTGCTCC TCTCCCGGGG GAACTACGCG GTCCGCGGCA CCGTGCGGGA 
    TCCAGGTGAT GCCAAGAATG ATCATCTCAG GGCGCTACAA GGTGCCGAGG 
    AGAGGTTGCA GCTGCTCAAG GCTGATCTGT TGGACTATGA CAGTGTAGCT 
    TCAGCGGTTG CCGGCTGTGA GGGCGTCTTC CATGTCGCCA GCCCTGTACC 
    CTCGGGCCGA TCCACCAACC CTGAGGTAGA GGTCATAGCT CCTGCTGTAA 
    CAGGCACACT TAATGTGTTG AAGGCCTGCC ATGAGGCAAA AGTTAAGCGA 
    GTTGTCATGG TGTCTTCCAT TGCTGCCGTG TTCAGTAATC CTAACTGGCC 
    AAAGGATAAG GCTTTCACTG AAGACAGTTG GTCAGATGAG GAATTATGCA 
    GAAAGAATCA GGATTGGTAT TACCTTTCGA AAACGGTGGC AGAGCGTGAG 
    GCTTTTGCTT ATGCAGCAAA AACTGGGCTG GACATTGTAA CTATTTGCCC 
    ATCATTGGTG ATTGGACCCT TAATGCAATC TACAGTAAAC GCGAGTAGTA 
    AAGTTCTCAT TAACTATTTC AAAGGAGATC GTGACACTGT CGAAAATAGA 
    CTCCGGAATG TAGTGGATGT TCGTGATGTT GCCAATGCTC TCCTTTTGGC 
    GTATGAAAAT CCAGCATCCG GACGATACAT CTGCAGCTCA GCTCCAATAA 
    GAGTCTCTGA TATGATAAAC ATTTTAAAGA CCTTATATCC AACTTATACT 
    TATCCCAAAA ACTTTGTGGA TGTGGAAGAG AACACCATAT ACAGTTTTGA 
    GAAACTTCAG AAGCTTGGCT GGAGTTTCAG GCCTATTGAG GAAACCCTCC 
    GGGACAGCGT GGAATCCTAC AAAGCATTTG GCATCCTTGA TTGAGGATCC 
    AAACTGTGAG AACTTCAGTG TCTGTTAAAC TCTCCATGAT TCATGTAATC 
    TGTGTTGAGA TCAACCGGGT CAATAAAGAA TCGTTATTAA AACC

    Gene models with high sequence identity

    1. AT2G33590.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 3e-89; Score: 325.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CINNAMOYL-COA REDUCTASE 1.2e-138
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.2e-138
    superfamily NAD(P)-binding domain 1.9e-63
    HMMPfam NAD-dependent epimerase/dehydratase 3.9e-30
    Coil coiled-coil 0
    Gene3D NAD(P)-binding domain 1.1e-39

    See the detailed result >

    AT2G33590.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G33600.1); Has 13062 Blast hits to 13044 proteins in 1974 species: Archae - 275; Bacteria - 5592; Metazoa - 467; Fungi - 894; Plants - 2514; Viruses - 60; Other Eukaryotes - 3260 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR