K20816

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20816

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20816

Determination of introduced cDNA(s)

  • J033102J01 - Rice Full-length cDNAs - Original: J033102J01

    full reading [+] show sequence

    Nucleotide sequence: J033102J01 - full reading 
    GGGCCGTCGC GCTCCGCTTT TCCTCCGCCG CCGCCTCCTC CTCATCCCTC 
    CTCCCGCGGA GAGGAGAGGA GAGCCGAGAG AGGAAGTGGA GCAATGGCGG 
    CCGCGGCGGA GGGCGATGAG GACCCGCGCT GGAGGAGGTG CAACACCGAC 
    TGCGTCTACT TCCTCGCCTC CCCCTTCACC TGCACCAAGG GGTCCAAGTG 
    CGAGTACCGC CATGCCGATG GCGCCCGGTT CAACCGCCGG AATTGCTGGT 
    ACTGGTTCAA GGGCAACTGC GTCAACCCGA GCTGCACATT TCGTCACCCC 
    CCACTGGAAA ACTTAAACAA AACCAAATCT TTAGCAGACC CACTCTCATT 
    GTGTTCTACT TCTGTCAAGG CAGCTAACCC TTGTTATTTC TACTATAACT 
    CGCACTGTTC AAAAGGTGAC AATTGCCCCT ACCTCCATGA GCCTCTAACT 
    TCTAATGATG CTGTGGGAAC TTCTTGTAAA GCTACCACTT CCAATCCTGC 
    TGTAAGTAAA AGTTATGTTG GAGATGAGAT GGTTGAAGAA TCGAAAGACA 
    CTATCACAAA TCCCTGTCAA GATACCTCTT GCCATATAAA AGAAGTTCCT 
    GTGTCAATCA ATCCTGAATT TGGTGAAGCT GAAGCTGTTT CCGGTGCACT 
    TGAAACATCA ACTGATATAG ATGAATACAT GAAATGTTCC GCAGTCTCAG 
    ATCTTAATTC AGGAGATTCA ACTATGGACC ACACAGAACA AGATGAGCGT 
    GATTCCTCTC CTGGATTTGA TGTGCTTGTG GATGATTGCC TCTCTAACAA 
    GAGTGATCTT GAACATCAAT TGACTACAGA GAGTGATAAT AAGGTGCTTC 
    ATGCAGAATA TGGTATTAGA GATCCAGTTC TTTATGATAT GTATTACCAT 
    GATCCAGAGT ACTATAACTA TGAACCAGAA TTTTGTGGTC TTGATGATCG 
    GCAAGGTTAC CTTTATCTTT GCCAGCCTAA CGGAGCTCAT GAGCATGAAA 
    GTGAGATCAC TTTGGGGCAT TTACTACCAC AAAATACTGA GGTCACTTCT 
    GATGAATATG ACAGAAGGTT CTTCAATCCC AGAAACTTCA CCAGCTCAGT 
    GGCAGATACT AACTTTGTTC ATCAGCACAC CCAGATTAGA CACATCTCAA 
    AAAGAAGACC TGAGAATAGA AAAGGTGCAA AGGGAAAGAA GGATTGCATT 
    AAGAGAAGCC GTTGCCTTGA ACCCAAGAAT AGTACTCAAC AGATTGAATC 
    AATGCCAACT CGTCAAAGGA AAGATTATTT GATGGGAGAG TGTCCTCAAC 
    CTGCTAACCA TGCTACTTTC AGGGGACGGA GGAAGAAAAA TAGAGGAAAG 
    CAACAGCATG TTCTTTCTGC TAAATCTTCT GAACATCCTA CTGCAGATTT 
    TACTGGGCCG AAGACCCTTG CTCAGATAAA AGAAGAGAAA TGTAAATCCA 
    ACTCAAGTTT TAGCCACTCC ACTGCTTGCA CGCCTAATGT GAGATCCTTC 
    TCAGATGATT TTGAGGGGCC CAAATCTCTG ACCGAGCTTC TCATGACTAA 
    GAGTAGGAGT TCTGTTGGCA AGTGACCATA TCCTAGCAAG TGTTTATGTA 
    AAAGTGCAGC TCAGTGAGAT TTCTGCTTTA CTTGGTTAGG ATGATGCCAA 
    CAGTTTTTTT TTTTTTTTTT TGAGGATGAA AGCAATTCAG TCAAAAGGTC 
    ACAGAAGGTC TAGTGACAAC TTTCTTTGAA CAAATTCTTA TGAGTTAACC 
    TGCCAGTGAA TGTGCGGATG AAGAAGGGAT CCATATTAAG G

    Gene models with high sequence identity

    1. AT2G02160.1 [+] show detail - CCCH-type zinc finger family protein
      E-value: 3e-31; Score: 133.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, CCCH-type 0.56
    HMMSmart Zinc finger, CCCH-type 4.1
    HMMSmart Zinc finger, CCCH-type 0.48
    ProfileScan Zinc finger, CCCH-type 9.714
    ProfileScan Zinc finger, CCCH-type 10.85
    ProfileScan Zinc finger, CCCH-type 13.291

    See the detailed result >

    AT2G02160.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger family protein
    Computational Description
    CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR