K20819

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20819

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20819

Determination of introduced cDNA(s)

  • J033044I21 - Rice Full-length cDNAs - Original: J033044I21

    full reading [+] show sequence

    Nucleotide sequence: J033044I21 - full reading 
    TGAGGAAAAA AAAAGGAGGA AAAGAAAAGA GGAGGAAAGC GAAGAGGTTG 
    GAGAGAGACG CTCGTCTCCA CGTCGCCGCC ATGGCCGCCC GCGCCGCCGC 
    CGCCGCGTTC CTGCTGCTGC TCATCGTCGG CGCGGCCACC GCGGCGCCGG 
    ACATGTCGAT CATCTCCTAC AACGCGGAGC ACGGGGCGCG GTGGCTGGAG 
    GAGGGGCCCA CGGAGGCCGA GGCGCGCGCC GCGTACGACC TCTGGCTCGC 
    CGAGAACGGC GGCGGCTCGC CCAACGCGCT CGGCGGCGAG CACGAGCGCC 
    GGTTCCTCGT GTTCTGGGAC AACCTCAAGT TCGTCGACGC CCACAACGCC 
    CGCGCCGACG AGCGCGGCGG GTTCCGCCTC GGGATGAACC GCTTCGCCGA 
    TCTCACCAAC GAGGAGTTCC GCGCGACCTT CCTCGGCGCC AAGGTCGCCG 
    AGAGGAGCCG CGCCGCCGGG GAGAGGTACC GCCACGACGG GGTGGAGGAG 
    CTGCCGGAGT CCGTCGACTG GAGGGAGAAG GGCGCCGTCG CCCCCGTCAA 
    GAACCAGGGC CAATGCGGAA GCTGCTGGGC CTTCTCCGCA GTAAGCACAG 
    TAGAAAGCAT CAACCAACTT GTTACTGGTG AGATGATCAC ATTGTCGGAA 
    CAAGAACTTG TAGAATGCTC AACCAATGGA CAGAACAGTG GCTGCAACGG 
    TGGGCTCATG GATGATGCCT TTGACTTCAT CATTAAGAAT GGAGGCATTG 
    ATACTGAAGA TGACTATCCT TACAAAGCTG TAGATGGCAA GTGTGACATC 
    AACAGGGAAA ATGCTAAGGT TGTGAGCATC GATGGCTTTG AGGATGTACC 
    TCAAAATGAT GAGAAATCAC TTCAGAAGGC GGTTGCTCAC CAACCAGTCA 
    GTGTTGCTAT TGAGGCTGGT GGCCGCGAGT TCCAGCTCTA TCATTCGGGC 
    GTCTTCAGCG GTAGGTGTGG CACAAGCCTT GACCATGGTG TGGTTGCCGT 
    CGGTTATGGC ACTGACAATG GCAAAGACTA CTGGATTGTC CGCAACTCTT 
    GGGGCCCGAA GTGGGGTGAG TCTGGATACG TTCGCATGGA GCGCAATATC 
    AATGTGACCA CGGGGAAGTG TGGCATTGCC ATGATGGCAT CATACCCTAC 
    CAAGAGCGGA GCAAACCCAC CCAAGCCATC TCCGACTCCT CCAACTCCTC 
    CAACACCACC TCCCCCATCC GCCCCTGACC ATGTCTGCGA TGATAACTTC 
    TCTTGCCCAG CGGGCAGCAC CTGCTGCTGC GCATTCGGCT TCAGGAATCT 
    CTGCTTGGTT TCGGGCTGTT GCCCAGTTGA AGGTGCAACC TGCTGCAAGG 
    ATCATGCCAG CTGCTGCCCG CCTGACTACC CTGTCTGCAA CACCCGGGCT 
    GGAACCTGCT CAGCGAGCAA GAACAGCCCA TTGAGCGTGA AGGCTTTGAA 
    GCGCACGCTC GCTAAGCTGA ACACCGCATG AGCTCATCGA TAACATGTAA 
    TCGGCGAGGA GAGGGGATGA GGCAGCGTGG AGCCTTTCTG AAATTTCTGC 
    TTCCGTGCCT CCATATATCG TTGTCGCATT TTGAGGGGAC AGCTTATTTA 
    CTCTACTGCC TGCCTTTTAT CTTACAGTGA TCTGTGTACA TAGCTCGATC 
    CAATTTGTAC TCTTATTTAT CTTCTCCAAT TTGTACTCTA TATAATTTAT 
    CATCTCAAGA ATACATTAAC GAAGATCCTG TTTTACCGTT CC

    Gene models with high sequence identity

    1. AT5G43060.1 [+] show detail - Granulin repeat cysteine protease family protein
      E-value: 3e-153; Score: 538.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYSTEINE PROTEASE 4.4e-200
    HMMPanther Peptidase C1A, papain 4.4e-200
    superfamily Cysteine proteinases 3.6e-111
    superfamily Granulin repeat 1.4e-10
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    FPrintScan Peptidase C1A, papain C-terminal 4.5e-10
    FPrintScan Peptidase C1A, papain C-terminal 4.5e-10
    FPrintScan Peptidase C1A, papain C-terminal 4.5e-10
    Gene3D no description 7.9e-109
    HMMSmart Proteinase inhibitor I29, cathepsin propeptide 3.1e-14
    HMMSmart Peptidase C1A, papain C-terminal 7.5e-125
    HMMSmart Granulin 2e-27
    HMMPfam Peptidase C1A, papain C-terminal 9.4e-86
    HMMPfam Granulin 5.3e-10
    HMMPfam Proteinase inhibitor I29, cathepsin propeptide 1.1e-09

    See the detailed result >

    AT5G43060.1

    Model type
    Protein coding
    Short Description
    Granulin repeat cysteine protease family protein
    Computational Description
    Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT1G47128.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR