K20821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20821

Determination of introduced cDNA(s)

  • J033099N16 - Rice Full-length cDNAs - Original: J033099N16

    full reading [+] show sequence

    Nucleotide sequence: J033099N16 - full reading
    GACTCCTCTC CCCTCTCCCT TCTCTCATCT CGCGCGCGGC GCGCCGCCGT 
    AGAGACGAAA TGATGATGGC TCAGAAGACG AAGGAGGCGG AGATCACGGA
    GCAGGATTCG CTGCTTCTGA CAAGGAATTT GCTCCGCATT GCTATATACA
    ACATCAGCTA CATCAGAGGT CTATTCCCTG AGAAGTACTT CAATGATAAG
    TCGGTTCCGG CACTAGAGAT GAAGATTAAG AAGCTAATGC CCATGGATAC
    TGAGTCGAGG AGGTTGATTG ATTGGATGGA AAAAGGTGTC TATGATGCAC
    TACAGAAGAA ATATCTCAAG ACCCTTCTCT TCTGCATCTG TGAGAAGGAG
    GAAGGCCCAA TGATTGAGGA GTATGCATTC TCATTTAGCT ACCCCAACAC
    GAGCGGTGAT GAAGTTGCAA TGAACTTGAG CCGCACAGGG AGCAAGAAAA
    ACAGTGCTAC ATTTAAATCA AATGCAGCAG AAGTCACTCC TGATCAGATG
    AGGAGCTCTG CTTGTAAGAT GATAAGAACA CTGGTTTCAC TTATGAGGAC
    CTTGGACCAA ATGCCAGAGG AGAGGACCAT TCTAATGAAG CTGCTATACT
    ACGATGATGT CACACCTGAA GATTACGAGC CACCCTTTTT TAAGTGTTGC
    GCTGACAACG AGGCCATAAA TATATGGAAC AAGAACCCCT TGAAGATGGA
    AGTTGGAAAT GTCAATAGCA AGCATCTCGT GTTAGCTTTG AAGGTCAAGA
    GTGTCCTTGA CCCTTGTGAT GATAACAATG TCAACAGTGA AGATGATAAT
    ATGAGCTTGG ATAATGAATC TGACCAAGAT AATGATTTTT CTGACACTGA
    GGTTCGCCCA TCTGAAGCAG AGCGTTACAT TGTTGCTCCA AATGATGGGA
    CTTGCAAAGG TCAAAATGGT ACAATCTCAG AAGATGATAC TCAAGATCCT
    GTTCACGAGG AAGAGCTAAC AGCTCAAGTA AGAGAGTGGA TATGCTCAAG
    AGACACTGAA AGTCTTGAGG TTTCAGATGT CCTTGTTAAT TTCCCCGACA
    TATCAATGGA AATGGTTGAA GATATTATGG AGAGGCTACT TAAAGATGGT
    TTACTATCCA GAGCAAAAAA GGATAGTTAT TCTGTTAATA AGATTGCTGA
    TCCTACAACA CCACACATAA AGAAAGAGGT CATCATGCAA AATGTCTCAC
    CTACTGAAGG AACTAAAAAT AGCAATGGTG ATCTGATGTA TATGAAGGCA
    CTGTACCATG CACTTCCAAT GGATTATGTG TCAGTAGGCA AACTTCATGG
    CAAGCTAGAT GGGGAGGCCA GCCAGAACAT GGTTCGTAAG TTGATTGAAA
    AAATGGTGCA AGACGGATAT GTCAAGAATT CAGCCAACCG AAGACTAGGC
    AAAGCTGTCA TTCATTCTGA AGTCACCAAC AGAAAGCTCC TTGAGATAAA
    AAAGATTCTG GAAGTCGATA TAGCCGAACA AATGGCCATT GATACCAATG
    CAGAACCTGG TGAGCCTGAG CGCAAAGACC ACCTGAGTGG CCATGAAATG
    AGAGATGGAT CGACGATGGG TTGCCTCCAG TCCGTCGGAT CTGACCTCAC
    CCGCACCCGG GAGCTTCCGG AGCCGCAGCA GAACGTGTCC ATGCAGAGCG
    GGCAGGAAGC TTCCACGGTG GATAAGGATC CAAGCAGGAC TCCTACAAGC
    GTGCGCGAGC AGGCGTCCGT TTGTTCCCTG GAGAGTGGGG TTCTCGGGCA
    GAAGGTCAGA AAGTCTTTGG CTGGTGCTGG CGGGACGCAG TGCTCGCAGG
    ACAAGCGATT CAGGAAGGCC AGCACGGTGA AGGAGCCGAT CCTCCAGTAC
    GTCAAGCGCC AGAAGTCCCA AGTTCAAGTT CAAGTTCAGT GAGGGTTCGT
    GTCGCAAGCG TCAGGAGCAA CTAACATCGT AGTTCAGGTG CAGAAGACCA
    CAAGTAGATA TATCCATCCT ATTCCTAGTT CCGGTGCTCA AGTTTGTGCA
    GATAGTCAGA GAGCACTCAC GCACACGTAG ATATCTGTCC ATGCCGCTGT
    CCCAAATGGC AAATGGAGAT AGACGCTACT ATGTGCTAAC ACACACTCAA
    ATTAAGCATT CAAAACGC

    Gene models with high sequence identity

    1. AT1G67370.1 [+] show detail - DNA-binding HORMA family protein
      E-value: 2e-175; Score: 613.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA-binding HORMA 1.2e-63
    Gene3D no description 0.000028
    HMMPanther MEIOSIS SPECIFIC PROTEIN HOP1 1.9e-49
    superfamily DNA-binding HORMA 2.8e-47
    ProfileScan DNA-binding HORMA 47.4

    See the detailed result >

    AT1G67370.1

    Model type
    Protein coding
    Short Description
    DNA-binding HORMA family protein
    Curator Summary
    meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.
    Computational Description
    ASYNAPTIC 1 (ASY1); CONTAINS InterPro DOMAIN/s: SWIRM (InterPro:IPR007526), DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT4G32200.1); Has 527 Blast hits to 490 proteins in 159 species: Archae - 0; Bacteria - 18; Metazoa - 158; Fungi - 114; Plants - 58; Viruses - 21; Other Eukaryotes - 158 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR