K20821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20821

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20821

Determination of introduced cDNA(s)

  • J033099N16 - Rice Full-length cDNAs - Original: J033099N16

    full reading [+] show sequence

    Nucleotide sequence: J033099N16 - full reading 
    GACTCCTCTC CCCTCTCCCT TCTCTCATCT CGCGCGCGGC GCGCCGCCGT 
    AGAGACGAAA TGATGATGGC TCAGAAGACG AAGGAGGCGG AGATCACGGA 
    GCAGGATTCG CTGCTTCTGA CAAGGAATTT GCTCCGCATT GCTATATACA 
    ACATCAGCTA CATCAGAGGT CTATTCCCTG AGAAGTACTT CAATGATAAG 
    TCGGTTCCGG CACTAGAGAT GAAGATTAAG AAGCTAATGC CCATGGATAC 
    TGAGTCGAGG AGGTTGATTG ATTGGATGGA AAAAGGTGTC TATGATGCAC 
    TACAGAAGAA ATATCTCAAG ACCCTTCTCT TCTGCATCTG TGAGAAGGAG 
    GAAGGCCCAA TGATTGAGGA GTATGCATTC TCATTTAGCT ACCCCAACAC 
    GAGCGGTGAT GAAGTTGCAA TGAACTTGAG CCGCACAGGG AGCAAGAAAA 
    ACAGTGCTAC ATTTAAATCA AATGCAGCAG AAGTCACTCC TGATCAGATG 
    AGGAGCTCTG CTTGTAAGAT GATAAGAACA CTGGTTTCAC TTATGAGGAC 
    CTTGGACCAA ATGCCAGAGG AGAGGACCAT TCTAATGAAG CTGCTATACT 
    ACGATGATGT CACACCTGAA GATTACGAGC CACCCTTTTT TAAGTGTTGC 
    GCTGACAACG AGGCCATAAA TATATGGAAC AAGAACCCCT TGAAGATGGA 
    AGTTGGAAAT GTCAATAGCA AGCATCTCGT GTTAGCTTTG AAGGTCAAGA 
    GTGTCCTTGA CCCTTGTGAT GATAACAATG TCAACAGTGA AGATGATAAT 
    ATGAGCTTGG ATAATGAATC TGACCAAGAT AATGATTTTT CTGACACTGA 
    GGTTCGCCCA TCTGAAGCAG AGCGTTACAT TGTTGCTCCA AATGATGGGA 
    CTTGCAAAGG TCAAAATGGT ACAATCTCAG AAGATGATAC TCAAGATCCT 
    GTTCACGAGG AAGAGCTAAC AGCTCAAGTA AGAGAGTGGA TATGCTCAAG 
    AGACACTGAA AGTCTTGAGG TTTCAGATGT CCTTGTTAAT TTCCCCGACA 
    TATCAATGGA AATGGTTGAA GATATTATGG AGAGGCTACT TAAAGATGGT 
    TTACTATCCA GAGCAAAAAA GGATAGTTAT TCTGTTAATA AGATTGCTGA 
    TCCTACAACA CCACACATAA AGAAAGAGGT CATCATGCAA AATGTCTCAC 
    CTACTGAAGG AACTAAAAAT AGCAATGGTG ATCTGATGTA TATGAAGGCA 
    CTGTACCATG CACTTCCAAT GGATTATGTG TCAGTAGGCA AACTTCATGG 
    CAAGCTAGAT GGGGAGGCCA GCCAGAACAT GGTTCGTAAG TTGATTGAAA 
    AAATGGTGCA AGACGGATAT GTCAAGAATT CAGCCAACCG AAGACTAGGC 
    AAAGCTGTCA TTCATTCTGA AGTCACCAAC AGAAAGCTCC TTGAGATAAA 
    AAAGATTCTG GAAGTCGATA TAGCCGAACA AATGGCCATT GATACCAATG 
    CAGAACCTGG TGAGCCTGAG CGCAAAGACC ACCTGAGTGG CCATGAAATG 
    AGAGATGGAT CGACGATGGG TTGCCTCCAG TCCGTCGGAT CTGACCTCAC 
    CCGCACCCGG GAGCTTCCGG AGCCGCAGCA GAACGTGTCC ATGCAGAGCG 
    GGCAGGAAGC TTCCACGGTG GATAAGGATC CAAGCAGGAC TCCTACAAGC 
    GTGCGCGAGC AGGCGTCCGT TTGTTCCCTG GAGAGTGGGG TTCTCGGGCA 
    GAAGGTCAGA AAGTCTTTGG CTGGTGCTGG CGGGACGCAG TGCTCGCAGG 
    ACAAGCGATT CAGGAAGGCC AGCACGGTGA AGGAGCCGAT CCTCCAGTAC 
    GTCAAGCGCC AGAAGTCCCA AGTTCAAGTT CAAGTTCAGT GAGGGTTCGT 
    GTCGCAAGCG TCAGGAGCAA CTAACATCGT AGTTCAGGTG CAGAAGACCA 
    CAAGTAGATA TATCCATCCT ATTCCTAGTT CCGGTGCTCA AGTTTGTGCA 
    GATAGTCAGA GAGCACTCAC GCACACGTAG ATATCTGTCC ATGCCGCTGT 
    CCCAAATGGC AAATGGAGAT AGACGCTACT ATGTGCTAAC ACACACTCAA 
    ATTAAGCATT CAAAACGC

    Gene models with high sequence identity

    1. AT1G67370.1 [+] show detail - DNA-binding HORMA family protein
      E-value: 2e-175; Score: 613.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA-binding HORMA 1.2e-63
    Gene3D no description 2.8e-05
    HMMPanther MEIOSIS SPECIFIC PROTEIN HOP1 1.9e-49
    superfamily DNA-binding HORMA 2.8e-47
    ProfileScan DNA-binding HORMA 47.4

    See the detailed result >

    AT1G67370.1

    Model type
    Protein coding
    Short Description
    DNA-binding HORMA family protein
    Curator Summary
    meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.
    Computational Description
    ASYNAPTIC 1 (ASY1); CONTAINS InterPro DOMAIN/s: SWIRM (InterPro:IPR007526), DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT4G32200.1); Has 527 Blast hits to 490 proteins in 159 species: Archae - 0; Bacteria - 18; Metazoa - 158; Fungi - 114; Plants - 58; Viruses - 21; Other Eukaryotes - 158 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR