K20828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20828

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20828

Determination of introduced cDNA(s)

  • J023004J15 - Rice Full-length cDNAs - Original: J023004J15

    full reading [+] show sequence

    Nucleotide sequence: J023004J15 - full reading 
    TTTCTCTCTC TCTCATTCTT GTGTTTCTTC TCGATCGATC TCTCGATTTC 
    TCTCTGTGCA CCAGCATCAG CTATGGTGTC CGACGCCAGC AAGAAGAAGG 
    CGGCGCAGAA GAAGGCCGCC GCCGCTGCCA AGAGGGGTGA CAAGGCCAAG 
    GCCGCCATTA CTCTCTCCGA GCGCACCTGC ACCGCCGTCC TCACCTCCCA 
    TCCCCTCTCC CGCGACATCC ACATCGAGTC CCTCTCCCTC ACATTCCACG 
    GCCATGACCT GCTTCTTGAC ACCGACCTGG AGCTCAACTA CGGCAGGCGA 
    TATGGTTTGC TTGGCTTAAA CGGCTGTGGA AAGTCCTGTC TCCTCAAAGC 
    TATAGGATGC CGGGAGCTTC CTATCCCTCC ACACATGGAC ATCTATCATC 
    TCACCCATGA GATCGAGGCT TCCGACATGT CTGCGCTACA AGCTGTCATC 
    AGCTGTGACG AACAGAGACT CCAGCTCGAG AAGGAGGCTG AAATCTTGGC 
    CGCTCAAGAT GACGGTGGCG GCGAAGCCCT GGACCGCGTT TATGAACGCT 
    TAGAAGCCAT CGACGCATCC ACCGCTGAAA AGCGTGCTGC AGAGATTTTG 
    TTTGGCTTGG GTTTTAACAA GCACATGCAG GCAAAGAAAA CCTGTGATTT 
    CTCTGGCGGT TGGCGCATGA GGATCGCTTT GGCTAGGGCG CTCTTCATGA 
    ATCCAACTAT CCTTTTGCTT GATGAGCCCA CCAATCATCT AGATCTTGAG 
    GCCTGTGTCT GGCTGGAGGA AACCTTGAAG AAATTTGACC GTATACTTGT 
    CGTCATATCA CACTCCCAGG ACTTCCTAAA TGGAGTATGT ACAAATATCA 
    TCCACATGCA AAACAGGAAG CTCAAGCTAT ACACTGGCAA CTATGACCAG 
    TATGTCCAAA CACGAGCCGA GCTTGAAGAA AATCAAATGA AACAATACAG 
    ATGGGAGCAG GACCAGATTG CCTCGATGAA GGAGTACATT GCACGGTTTG 
    GTCACGGATC TGCCAAGCTG GCCCGACAGG CTCAAAGTAA AGAGAAAACT 
    CTTGCTAAGA TGGAGCGTGG TGGGCTCACG GAGAAGGTTG TAAGGGATAA 
    GGTATTGACG TTCCGCTTCA CTGATGTTGG CACGCTACCA CCTCCAGTGC 
    TGCAGTTTGT GGAGGTCACA TTTGGGTACA CACCAGACAA CCTGATCTAC 
    AAGAACCTAG ATTTTGGTGT TGACCTTGAC TCAAGGGTGG CGCTGGTTGG 
    TCCTAATGGG GCTGGGAAGA GTACGCTCCT TAAACTCATG ACAGGTGATC 
    TCATACCGCT GGACGGCATG GTGAGGCGAC ACAACCATCT CAGGATCGCA 
    CAATTCCACC AGCACCTTGC AGAGAAGCTG GACCTGGACA TGTCAGCTCT 
    GCAGTACATG ATGAAGGAAT ACCCAGGGAA CGAGGAGGAG AGGATGAGGG 
    CAGCCATCGG CAAGTTTGGG TTGTCAGGGA AGGCACAGGT AATGCCAATG 
    AGGAACCTGT CGGACGGGCA GAGGAGCAGA GTGATATTTG CATGGTTGGC 
    GTGGAGGGAG CCACACATGC TGCTGCTGGA TGAGCCAACG AACCATCTGG 
    ACATTGAAAC AATCGACTCT CTTGCAGAGG CGCTGAATGA ATGGGATGGA 
    GGGCTTGTGC TGGTGAGCCA TGACTTCAGG CTGATCAACC AAGTGGCGCA 
    GGAGGTATGG GTGTGCGAAA AGCAGGCGGT GACCAGGTGG GAAGGTGACA 
    TCATGGAGTT CAAGGAGCAC CTGAGGAGCA AGGCCGGAGT GGACGATTGA 
    GTTGAGTTGA GTTGAGTAGT TTTGATCTTG CTGCCTGGCC CGGAGAGGAG 
    ATACCATCAC TCTGCTAGTT ACTAGTATTT CTTCGGCTGT TACTAAACTA 
    TACTGCCCAG CCTAACGGGG ACGACGACTG CATCATCATC TCTTGATCTC 
    TCTCTCTTAG TTAAGTTGGA TGCTTGTCAC GGATGTTTGT ACCTGATCTC 
    CATCAACTAC ATCTGATGCT ATAGCCCATA TGATGTACCG TCCTCTTCTT 
    GGGGTCTCTG GAGAATGAGG AAACAGCAAG ATCCAGCCAG CATAGCATGT 
    ATGTATAGTG TAATTAGCTG GTTTGTTGGC GGTGCACATG CATAAGATAT 
    ACTTCCTCCG TTTCATATTA TAATACTATC TATTATTGCC CACATTCATA 
    TATATGTCTA GATTCATTAG CATCTATATG AATGTGGGCA ATGATAGAAA 
    GTCTTATAAT ATGAAACGGA GGGAGTATTA TCTTGGTTTG CACTTGCATG 
    ATCACCTGCT GTAGTTATTA TTATCAGTGA CCAAGTTCCC CTAGCTAGCA 
    GTAGCACTCC ATGAAAAGAT ATCTACATGA AACTGTACCA CCCCCACGAT 
    ATTATATATG AGATTGGATT TTAAACT

    Gene models with high sequence identity

    1. AT5G60790.1 [+] show detail - ABC transporter family protein
      E-value: 0; Score: 899.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 8.8e-29
    Gene3D no description 4.6e-32
    ProfileScan ABC transporter-like 14.786
    ProfileScan ABC transporter-like 15.226
    HMMPfam ABC transporter-like 0.000000000000011
    HMMPfam ABC transporter-like 5.5e-16
    HMMPfam Protein of unknown function DUF1602 0.00000029
    PatternScan ABC transporter, conserved site 0
    Coil coiled-coil 0
    HMMSmart ATPase, AAA+ type, core 0.000017
    HMMSmart ATPase, AAA+ type, core 0.00022
    superfamily P-loop containing nucleoside triphosphate hyd 8.1e-44
    superfamily P-loop containing nucleoside triphosphate hyd 1.8e-42
    HMMPanther ATP-BINDING CASSETTE, SUB-FAMILY F (GCN20), M 1.3e-291
    HMMPanther ATP-BINDING TRANSPORT PROTEIN-RELATED 1.3e-291

    See the detailed result >

    AT5G60790.1

    Model type
    Protein coding
    Short Description
    ABC transporter family protein
    Curator Summary
    member of GCN subfamily
    Computational Description
    GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR